CryoSPARC Discuss

Topic		Replies	Views	Activity
CryoSPARC v5.0.0-v5.0.7: Fix for Live session compaction bug Troubleshooting Hi all, We would like to inform users that we have discovered an issue in CryoSPARC v5.0.0-v5.0.7 where, due to a rare race condition scenario, initiating CryoSPARC Live session compaction may incorrectly delete files o…		1	28	November 5, 2026
Before You Post: Troubleshooting Guidelines Troubleshooting Dear cryoSPARC users, Thank you for communicating with us on the discussion forum. Before you post your topic, check the following items: Are you on the latest version of cryoSPARC? cryosparcm update and see Softwar…		0	12988	October 15, 2018
Encountered a Closed Topic? Troubleshooting Forum moderators may Close topics for various reasons. If you find that a topic to which you would like to add a post has been Closed, please Create a new topic for your post. In your post, include the URL of the topic…		0	1959	November 30, 2023
Moving the whole database and data to a new cluster Data Management		6	99	November 6, 2026
Suggestions forSeparating Conformational Heterogeneity in cryoSPARC Cryo-EM Data Processing		2	24	November 6, 2026
SIGSEGV error during reference based motion correction, just after refmotion_hyperparameters Troubleshooting	$doesnotdiffract - Original Poster$	5	34	November 6, 2026
V5.1.0 volume viewer not working Application		13	115	November 6, 2026
Multiple jobs on same GPU broken/removed? Features and Functionality		0	20	November 6, 2026
Reconstruction of (really) flexible protein Cryo-EM Data Processing		2	75	November 6, 2026
Web UI stuck at "Attempting to Reconnect..." Install, Configure and Update		0	28	November 6, 2026
Patch CTF with Junk Mask fails when F-crop 3/4 is applied in Patch Motion in v5.1.0 Troubleshooting		0	29	November 6, 2026
CryoSPARC 5.1: specifications of system(s) used for performance improvements Hardware and Performance		0	43	November 6, 2026
Cryosparc 5.1 update fails in AlmaLinux8 Install, Configure and Update		1	48	November 5, 2026
Failed to upgrade to 5.1.0 - supervisorctl error Install, Configure and Update		4	78	November 5, 2026
Database filled the disk: ~230 GB of orphaned GridFS chunks (fs.chunks with no fs.files entry) in CryoSPARC 5 Data Management		1	29	November 5, 2026
V5.0.7: cryosparcm database backup, database export-instance-config and database export fail with “Failed to mongo export” (deprecated backup --dir works) Troubleshooting		2	28	November 5, 2026
Denoiser training during live processing Features and Functionality		0	19	November 5, 2026
Backing up a ~1.2 TB v5 database: can we rely on `recover` plus instance config exports, and is the size expected? Install, Configure and Update		0	19	November 5, 2026
Add fp16 output option for particle subtraction Utilities feature_request		2	340	November 5, 2026
Three-subunit complex stuck at ~9.5 Å after heterogeneous refinement Cryo-EM Data Processing		4	145	November 4, 2026
Decent 2D classes but poor 3D reconstruction 3D Reconstruction		2	85	November 4, 2026
Error while launching jobs - Job is in status launched so it cannot be run Troubleshooting		9	103	November 3, 2026
Cryosparc offline cluster jobs Install, Configure and Update		0	26	November 3, 2026
Split - Extract Mulitple - Combine Particle Picking feature_request		1	56	November 2, 2026
SSD caching workflow Data Management		0	35	November 2, 2026
Incorrect pixel size mitigation strategies Cryo-EM Data Processing		1	97	November 1, 2026
Odd Dip in FSC Curve in 3D Flex 3D Flexible Refinement		2	88	October 31, 2026
5.0.6: ab-initio reconstruction loop 3D Reconstruction		36	740	October 30, 2026
Troubleshooting the CryoSPARC Live File Engine CryoSPARC Live		5	117	October 29, 2026
Local resolution estimation issue Post Processing		5	236	October 29, 2026

CryoSPARC v5.0.0-v5.0.7: Fix for Live session compaction bug

Hi all, We would like to inform users that we have discovered an issue in CryoSPARC v5.0.0-v5.0.7 where, due to a rare race condition scenario, initiating CryoSPARC Live session compaction may incorrectly delete files o…

1

28

November 5, 2026

Before You Post: Troubleshooting Guidelines

Troubleshooting

Dear cryoSPARC users, Thank you for communicating with us on the discussion forum. Before you post your topic, check the following items: Are you on the latest version of cryoSPARC? cryosparcm update and see Softwar…

0

12988

October 15, 2018

Encountered a Closed Topic?

Troubleshooting

Forum moderators may Close topics for various reasons. If you find that a topic to which you would like to add a post has been Closed, please Create a new topic for your post. In your post, include the URL of the topic…