Topic Replies Activity
Monitoring CPU, Memory and GPU Usage

When running cryoSPARC, it can be valuable to keep track of your worker instance’s hardware statistics to understand more about the resource usage of a job. In particular, monitoring the utilization of GPUs running cryoS…

3 April 9, 2020
Csparc2star.py final update

Hi csparc2star.py users. I made a major change to csparc2star.py in what is very likely to be the last update given the upcoming built-in import/export tools. The new version supports any number of .cs files as input. T…

33 March 30, 2020
Before You Post: Troubleshooting Guidelines

[image] Dear cryoSPARC users, Thank you for communicating with us on the discussion forum. To make it easier for us to understand and troubleshoot issues and errors encountered, please use the following template to pr…

1 October 15, 2018
Sample projection from a uniform distribution over SO(3) for Simulate Data job 1 May 28, 2020
Error in non-uniform refinement 6 May 28, 2020
Patch CTF and curate exposures - print statistics? 4 May 28, 2020
Fundamental flaw on particle locations 7 May 27, 2020
Improvements for clusters 18 May 27, 2020
Recover jobs that were deleted? 7 May 27, 2020
Extract from micrographs shows neither error nor output 3 May 27, 2020
"list index out of range" error message while trying to run job after fresh installation 3 May 27, 2020
CryoSparc 2.13.2: Patch motion correction (multi) runs very slow 14 May 27, 2020
Download archive of 3D classes 15 May 27, 2020
Output particles in "intermediates" mode of 3D-variability display? 13 May 26, 2020
Problem updating to 2.15 5 May 26, 2020
Storage of raw data 1 May 26, 2020
Issues with Patch CTF after Patch Motion Correction 6 May 26, 2020
CPU parallelization of particle extraction? [Feature request] 3 May 26, 2020
IndexError parsing motioncor2 results 1 May 25, 2020
Add custom submission parameters to jobs 3 May 26, 2020
Convert .cs file to star in 2D selection job 8 May 25, 2020
Check if data to be cached is larger than available cache quota 2 May 25, 2020
Resolution in FSC 11 May 25, 2020
Local refinement artifacts, spikes, possibly over refinement 6 May 25, 2020
Inspect picks slowness and suggestion 2 May 22, 2020
Importing motion corrected micrograph 3 May 22, 2020
Bug in template picker - ignores filter resolution 1 May 22, 2020
Small membrane proteins: 2D classification and ab-initio reconstruction 4 May 21, 2020
Full-frame motioncorrection fails on second movie, processes one fine (cuMemAlloc failure) 11 May 21, 2020
I can't enter the http://<workstation_hostname>:39000 4 May 21, 2020