Csparc2star.py final update ( 2 ) [Import and Export] (33)

Hi csparc2star.py users. I made a major change to csparc2star.py in what is very likely to be the last update given the upcoming built-in import/export tools. The new version supports any number of .cs files as input. T…

Working on COVID-19 related cryo-EM structures? [Cryo-EM Data Processing] (6)

Dear cryoSPARC users, If you or anyone you know is working on COVID-19 related structures and could use any help, advice or input from our team for data processing, please reach out to us at feedback@structura.bio. This…

Monitoring CPU, Memory and GPU Usage [Tips] (2)

When running cryoSPARC, it can be valuable to keep track of your worker instance’s hardware statistics to understand more about the resource usage of a job. In particular, monitoring the utilization of GPUs running cryoS…

Before You Post: Troubleshooting Guidelines [Troubleshooting] (1)

[image] Dear cryoSPARC users, Thank you for communicating with us on the discussion forum. To make it easier for us to understand and troubleshoot issues and errors encountered, please use the following template to pr…

Heterogeneous refinement issue - 'NoneType' object is not subscriptable [Troubleshooting] (1)
Could a SSD card fasten the rate of refinement? [Hardware and Performance] (3)
Visualizing 2D classes [2D Classification] (1)
2.14 fails receiving jobs from command line [Troubleshooting] (10)
Method of confering different signal to noise ratios [CryoSPARC Parameters] (1)
Deleted job still appear in tree view [Troubleshooting] (5)
Documentation of command line interface [Features and Functionality] (6)
Local refinement memory error with NU-refinement ON and Fulcrum coordinates [Troubleshooting] (3)
Wrapper script to check hostname [Tips] (1)
How can I bin movies during motion correction? [Motion Correction] (8)
IndexError while running Topaz [Troubleshooting] (7)
Manual picking interactive job does not launch [Troubleshooting] (3)
Updating Advanced SSD Parameters on a Cluster [Hardware and Performance] (5)
ID error: Another cryoSPARC instance is running with the same license ID [Install, Configure and Update] (2)
Local motion always worsens map [Motion Correction] (19)
Allocating multiple GPUs for a job [Hardware and Performance] (6)
2D classification error invalid entry in index array [2D Classification] (2)
Overfitting issues [3D Refinement] (2)
2D classification ValueError: total size of new array must be unchanged [Troubleshooting] (9)
cryoSPARC Live and SLURM [Troubleshooting] (6)
Job display order [Features and Functionality] (8)
Local refine can be connected to own mask (minor bug) [Local Refinement] (2)
Error during motion correction [Troubleshooting] (2)
Does cryosparc remove duplicate particles? [3D Refinement] (3)
Cluster Queuing for Import Movies [Import and Export] (3)
CTF estimation: IndexError: index 0 is out of bounds for axis 0 with size 0 [Troubleshooting] (3)