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About the 3D Refinement category
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1
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1032
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December 31, 2024
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Bogus NaN particle warnings in refinement
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16
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781
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February 18, 2026
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Ab initio refinement suggestion
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1
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71
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February 17, 2026
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Ab initio refinement job query
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1
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84
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February 3, 2026
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NU Refinement job terminated abnormally from reextracted particles and
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3
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86
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November 27, 2025
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Can't see if FSC reached to zero
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3
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138
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October 31, 2025
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GSFSC curves fall very fast
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2
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139
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October 31, 2025
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Does cryosparc remove duplicate particles?
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12
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3962
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October 27, 2025
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Job process terminated abnormally-Non Uniform refinement
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1
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46
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October 9, 2025
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Mixing and matching particles.blob, particles.ctf etc - what can go wrong?
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6
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119
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September 17, 2025
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Advices for small transmembrane protein in 3D reconstruction
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8
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295
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September 11, 2025
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Sharp dropoff in non-autotightened FSC not related to (user-provided / dynamic) mask
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6
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187
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August 18, 2025
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Weird result of NU refinement
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22
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359
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August 5, 2025
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Finding particles based on cFAR score, do I still have junk?
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7
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160
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July 31, 2025
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Particle order in refinement matters?
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11
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336
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July 29, 2025
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NU-refine runs too slow after using particles from local CTF refine
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1
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78
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July 28, 2025
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Help with Symmetry Alignment in non-uniform Refinement (C2 Symmetry Misaligned)
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2
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139
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July 26, 2025
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Inquiry regarding heterogenous refinement
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1
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75
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July 7, 2025
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Two Distinct Populations with Different Density Orientations in Refinement
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8
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195
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July 2, 2025
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Dealing with symmetry of nucleosome while processing
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4
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284
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July 1, 2025
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Random seed in heterogeneous refinement - query
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0
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67
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June 24, 2025
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Homogeneous refinement failed
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3
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78
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June 19, 2025
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(Bad) Symmetry alignment at the start of jobs (and workaround)
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4
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163
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June 10, 2025
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Unrealistic FSC for negative stain data: citation?
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0
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67
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June 6, 2025
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Sharp gap in the FSC
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1
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126
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June 6, 2025
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70,000+ open files by NU-ref job
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1
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80
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June 6, 2025
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Unsharpened map from NU Refinement
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1
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161
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June 2, 2025
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cFAR plot and fitting of the molecule in refined map
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2
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170
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May 14, 2025
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NaN error in refinement
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6
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151
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May 13, 2025
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All([d == N for d in vol.shape])
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4
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78
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May 13, 2025
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