| Category | Topics |
|---|---|
TroubleshootingReport and troubleshoot errors encountered when processing data.
|
645
|
3D RefinementQuestions, discussion and errors relating to homogeneous and heterogeneous (multi-reference) refinement, and non-uniform refinement.
|
68
|
CryoSPARC LiveQuestions, issues and feature requests relating to cryoSPARC Live.
|
21
|
Particle PickingQuestions, discussion and error messages relating to manual and template based automatic particle picking, and particle extraction.
|
44
|
Features and FunctionalityRequests for new jobs and features in cryoSPARC. If you have questions about an existing job or feature, please submit them under the appropriate category (e.g., 3D reconstruction, CryoSPARC Parameters, etc.).
|
284
|
Import and ExportQuestions, discussion and errors encountered when importing and exporting movies, micrographs, particles, volumes and other files.
|
98
|
Install, Configure and UpdateHow to install, configure and update cryoSPARC on a workstation or cluster. Please refer to these instructions first.
|
257
|
3D ReconstructionQuestions, discussion and errors encountered when performing homogeneous and heterogeneous ab-initio reconstruction.
|
15
|
Local RefinementQuestions, discussion and errors encountered when using local refinement and signal subtraction.
|
31
|
Motion CorrectionQuestions, discussion and errors encountered when performing global (rigid) and local (per particle) motion correction.
|
61
|
Data ManagementQuestions and discussion relating to data management for cryo-EM.
|
3
|
TipsBest practices and how-tos for using and getting the most out of cryoSPARC.
|
92
|
Hardware and PerformanceQuestions and discussion relating to hardware setup and cryoSPARC performance.
|
34
|
2D ClassificationQuestions, discussion and error messages relating to 2D classification of particles.
|
38
|
3D Variability AnalysisQuestions and discussion regarding the 3D variability analysis job.
|
31
|
Exposure CurationQuestions, discussion and error messages arising when curating and inspecting micrographs.
|
18
|
CryoSPARC ParametersQuestions about job parameters and how to optimize these.
|
10
|
Cryo-EM Data ProcessingGeneral questions and discussion relating to cryo-EM image processing and methods.
|
25
|
|
6
|
|
Post ProcessingQuestions, discussion and errors relating to post processing job types, including local resolution estimation, local filtering, align 3D maps, reslog type analysis, and 3DFSC analysis. Also for utilities such as volume tools and sharpening.
|
7
|
UtilitiesFor discussion about Volume Tools, Sharpening Tools, Particle Sets Tools, Exposure Sets Tools.
|
4
|
CTF EstimationQuestions, discussion and errors encountered when estimating CTF values.
|
15
|
|
0
|
