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Install, Configure and Update
How to install, configure and update cryoSPARC on a workstation or cluster. Please refer to these <a href="https://cryosparc.com/docs/reference/install/">instructions</a> first.
Troubleshooting
Report and troubleshoot errors encountered when processing data.
Features and Functionality
Requests for new jobs and features in cryoSPARC. If you have questions about an existing job or feature, please submit them under the appropriate category (e.g., 3D reconstruction, CryoSPARC Parameters, etc.).
CTF Estimation
Questions, discussion and errors encountered when estimating CTF values.
3D Refinement
Questions, discussion and errors relating to homogeneous and heterogeneous (multi-reference) refinement, and non-uniform refinement.
Import and Export
Questions, discussion and errors encountered when importing and exporting movies, micrographs, particles, volumes and other files.
Particle Picking
Questions, discussion and error messages relating to manual and template based automatic particle picking, and particle extraction.
Motion Correction
Questions, discussion and errors encountered when performing global (rigid) and local (per particle) motion correction.
Uncategorized
Tips
<strong>Best practices and how-tos for using and getting the most out of cryoSPARC.</strong>
Hardware and Performance
<strong>Questions and discussion relating to hardware setup and cryoSPARC performance.</strong>
Local Refinement
Questions, discussion and errors encountered when using local refinement and signal subtraction.
Exposure Curation
Questions, discussion and error messages arising when curating and inspecting micrographs.
Cryo-EM Data Processing
General questions and discussion relating to cryo-EM image processing and methods.
3D Reconstruction
Questions, discussion and errors encountered when performing homogeneous and heterogeneous ab-initio reconstruction.
CryoSPARC Parameters
Questions about job parameters and how to optimize these.
2D Classification
Questions, discussion and error messages relating to 2D classification of particles.
Post Processing
Questions, discussion and errors relating to post processing job types, including local resolution estimation, local filtering, align 3D maps, reslog type analysis, and 3DFSC analysis. Also for utilities such as volume tools and sharpening.
