3D Variability Analysis

Topic	Replies	Views	Activity
New case study: Discrete and Continuous Heterogeneity in FaNaC1 education_and_advice Hello CryoSPARC Users! Today we added a new case study to the CryoSPARC guide. This case study uses EMPIAR 11631 and 11632 (FaNaC1 in the apo and FMRFa-bound states, respectively), to investigate techniques for resol…	2	147	May 25, 2025
About the 3D Variability Analysis category	1	926	July 12, 2019
Export 3DVA results in chimera as movie	5	3789	May 13, 2025
“Remove Duplicates” doesn't work after 3DVA	3	120	May 6, 2025
3DVA giving me class that does not appear in 3D classification	2	93	April 21, 2025
Why do some of the maps of homogeneous refinement have lower quality than the 3d variability display?	1	51	April 14, 2025
3DVA causes malfolmation of transmembrane helices	9	113	April 11, 2025
3DVA colour scale units	2	74	April 1, 2025
3DVA , latent coordinate (eigenvalue?) and protein movement	5	100	March 26, 2025
Question nice 3DVAR intermediates, but lower resolution refine	7	1285	March 22, 2025
Cluster mode didn't show 3D plot	2	41	January 20, 2025
3D-VA display - output "particles from all frames" feature_request	1	61	January 20, 2025
I am encountering an error while performing 3D Variability	12	192	January 14, 2025
3DVA Plot components raw values (update?) education_and_advice	21	768	January 10, 2025
Downsampling problem in combined particle stacks	10	203	December 31, 2024
ValueError when running 3DVA with more than 1 component	1	79	December 3, 2024
Output particles of multiple components in intermediates mode feature_request	6	440	December 2, 2024
3D-VA vs 3D class population distributions	12	458	November 13, 2024
C2 symmetry with symmetry breaking features	29	7222	October 19, 2024
numpy.linalg.LinAlgError: Array must not contain infs or NaNs from 3D Variability of v3.1.0	8	2867	October 16, 2024
Clustering in 3D variability display	5	428	September 11, 2024
Symmetry expansion for symmetric particle prior to 3DVA	5	651	May 27, 2024
Experiencing an error when running 3D variability	5	421	May 24, 2024
Run refinement for each frame and corresponding particles directly education_and_advice	2	376	April 10, 2024
Combining particles from two clusters	2	397	March 8, 2024
Difference between a cluster volume and homogeneous reconstruction of the same cluster	2	323	March 4, 2024
3DVA job getting stuck when caching particles to SSD	7	525	February 23, 2024
Bug: 3DVA display (cluster) fails with skip reconstruction	1	391	January 15, 2024
3dva: cuda_error_out_of_memory	10	1414	November 22, 2023
Display 3DVA results as colored map on ChimeraX	3	843	November 15, 2023

New case study: Discrete and Continuous Heterogeneity in FaNaC1

education_and_advice

Hello CryoSPARC Users! Today we added a new case study to the CryoSPARC guide. This case study uses EMPIAR 11631 and 11632 (FaNaC1 in the apo and FMRFa-bound states, respectively), to investigate techniques for resol…