@wtempel Sorry. I just realized it is not due to cryosparc version issue. But rather due to this project was imported from another machine and it seems to have been set to “/home/cryosparc/bin/topaz.sh” for topaz script, which is different from the current machine. Despite I changed the path in the job, it still go for this project-level parameter. I tried to remove this setting from the project-level parameters tab. But it does not help.
Hi, we also have this issue with DeepEMhancer in v4.1.2. Trying to queue the job led to the similar error message (I am curious why the error message complains about the topaz.sh script while I was trying to run a DeepEMhancer job):
Unable to queue P7 J182: ServerError: Failed to enqueue P7 J182 (deepemhancer): Job has builder errors. Path to deepEMhancer executable: Invalid path specified: /home/yangyang/Applications/cryoem_tools/topaz.sh directory allowed: False; file allowed: True; glob allowed: False
However, DeepEMhancer ran successfully in another Project that does not have project-level setting for Topaz and DeepEMhancer. In addition, resetting the project-level setting fort the problematic project did not solve the issue.
Here is the output of ps xuww | grep supervisor: