Hey All,
My cryosparc version is v3.3.1. One component of my 3DVA represented another conformation of my target protein in simple series mode. Thus, I want to fitler these partcles out from the whole dataset by using cluster display mode. I selected ‘Only use these components: 0’ and only the component was loaded into analysis but an Error was reported after cluster particles as:
File “cryosparc_worker/cryosparc_compute/run.py”, line 85, in cryosparc_compute.run.main
File “cryosparc_worker/cryosparc_compute/jobs/var3D/run_disp.py”, line 320, in cryosparc_compute.jobs.var3D.run_disp.run
IndexError: index 1 is out of bounds for axis 1 with size 1
We do indeed assume we have at least 2 components for the clustering job. The clustering itself (based on Gaussian Mixture models) will still work on 1 component, but our standard plotting will not. We can fix this in an upcoming release.
In the meantime, perhaps using Intermediates mode with component 0 will suffice? This will effectively cluster the particles based on several equally sized (overlapping) regions along that component dimension.
Hi @ChemJ, you can do this, you just need to replace the other components with your desired component (so it is effectively clustering self vs self) using the low level results interface.
