Welcome to the forum @aravi.
Please post text-based information, such as terminal output as text.
The license verification status error may be shown for a variety of reasons and may indicate an inoperable. Do the lines below those shown in the screenshot provide useful information?
What are the outputs of the command
ps -eo user:12,pid,ppid,start,cmd | grep -e cryosparc_ -e mongo
ls -l /tmp/cryosparc*.sock /tmp/mongo*.sock
Can the CryoSPARC master host access the CryoSPARC license URL?
If the qsub
command should run on a host other than the CryoSPARC master host, you could include a call to ssh
inside the send_cmd_tpl
cluster info variable. Here is a SLURM example, which can be adapted for PBS.
{
"send_cmd_tpl": "ssh submit.cluster.mydomain {{ command }}",
"qsub_cmd_tpl": "/opt/slurm/bin/sbatch {{ script_path_abs }}",
"qstat_cmd_tpl": "/opt/slurm/bin/squeue -j {{ cluster_job_id }}",
"qdel_cmd_tpl": "/opt/slurm/bin/scancel {{ cluster_job_id }}",
"qinfo_cmd_tpl": "/opt/slurm/bin/sinfo",
"cache_path": null,
"cache_reserve_mb": null,
"cache_quota_mb": null,
"name": "slurm1",
"title": "slurm1",
"worker_bin_path": "/progs/cryosparc_worker/bin/cryosparcw"
}