Hi,
we had today a problem with the update from 2.14 to 2.15. After stopping the cryosparc service and running the cryosparcm update --version=v2.15.0, we got an error regarding the DB while trying to run:
Starting cryoSPARC System master process.. CryoSPARC is not already running. database: ERROR (spawn error) Traceback (most recent call last): File "<string>", line 1, in <module> File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py", line 1149, in database_names "listDatabases")["databases"]] File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/database.py", line 491, in command with client._socket_for_reads(read_preference) as (sock_info, slave_ok): File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/contextlib.py", line 17, in __enter__ return self.gen.next() File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py", line 859, in _socket_for_reads with self._get_socket(read_preference) as sock_info: File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/contextlib.py", line 17, in __enter__ return self.gen.next() File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py", line 823, in _get_socket server = self._get_topology().select_server(selector) File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/topology.py", line 214, in select_server address)) File "/home/cryosparc_user/software/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/topology.py", line 189, in select_servers self._error_message(selector)) pymongo.errors.ServerSelectionTimeoutError: localhost:39001: [Errno 111] Connection refused
[cryosparc_user@cryosparc ~]$ cryosparcm status
CryoSPARC System master node installed at
/home/cryosparc_user/software/cryosparc/cryosparc2_master
Current cryoSPARC version: v2.15.0cryosparcm process status:
app STOPPED Not started
app_dev STOPPED Not started
command_core STOPPED Not started
command_proxy STOPPED Not started
command_rtp STOPPED Not started
command_vis STOPPED Not started
database FATAL unknown error making dispatchers for ‘database’: EACCES
I’ve tried to recover the db , and to repair, but nothing.
Can you help please?