Hi @Elad,
It looks like the update process couldn’t delete the directory properly (cryosparc was still somehow running/ another user had a session open?) You data should be fine, but I’d recommend stopping cryoSPARC completely (cryosparcm stop), ensuring any processes aren’t alive (ps -ax | grep "supervisord", kill any cryoSPARC 2 PID’s) manually deleting only the cryosparc2_master directory, and then reinstalling cryoSPARC.