After an update from 4.4.1 to 4.5.3 (including patch 240807) I can no longer build an Ab initio job on a standalone installation. The error is: Unable to create job: ServerError: ‘particle.alignments3D_multi’
There is no input at this point, as Cryosparc just refuses to create an Ab initio job from job builder. The problem seems to be specific to Ab initio, as other types of jobs can be created and they run without issues.
Cryosparc was stopped and restarted after the patch. Is there something obvious that could have gone wrong during upgrade or is it a bug?
Peter
BTW, on this system every update requires me to manually update the worker. I wonder if the patch was not applied to the worker with “cryosparcm patch”. Is there a way to check if worker has been patched? There is a patch file in the worker directory, but it is from an older date.
You could:
cd /path/to/cryosparc_worker/
ls -l bin/
cat version patch
bash-4.2$ cd cryosparc_worker
bash-4.2$ ls -l bin/
total 36
-rw-r–r–. 1 cherep01 fs-cmd-chl 13701 Jun 4 21:19 connect.py
-rwxr-xr-x. 1 cherep01 fs-cmd-chl 14496 Aug 6 19:16 cryosparcw
-rw-r–r–. 1 cherep01 fs-cmd-chl 483 Jun 4 21:19 validate.py
bash-4.2$
bash-4.2$ cat version patch
v4.5.3
240807
so it was patched… perhaps I should step back to an earlier version (?)
after re-installing from scratch cryosparc (v4.5.3) is working all fine. I think the original update from 4.4.1 to 4.5.3 and/or the patch was not fully applied because root partitiion had no free space (which was discovered during reinstallation, when it caused an error).
Peter
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Be aware that during operation the size of the cryosparc_master directory will grow as master logs are written to cryosparc_master/run. Please also monitor the volume that holds the (growing) CryoSPARC database for available capacity.