Troubleshooting: T20S extensive workflow patch motion correction failure

Troubleshooting
2

Hi @Lucy, assuming you have complete CUDA 10 installation, you may just have to re-install the CUDA-specific dependencies in the cryosparc2_worker folder. Here’s how you do that:

  1. Navigate to where you installed the cryosparc2_worker via command line
    cd /path/to/cryosparc2_worker
  2. Enter the following variables, changing the CUDA_PATH with the correct path (if it differs):
    export CUDA_PATH="/usr/local/cuda-10.0"
export CUDA_INC_DIR="$CUDA_PATH/include"
export C_INCLUDE_PATH="$CUDA_INC_DIR"
export CPLUS_INCLUDE_PATH="$CUDA_INC_DIR"
  3. Re-run install.sh with your license ID:
    bash ./install.sh --license "xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx" \
    --cudapath $CUDA_PATH

If you see any errors, please send over the output. If you see no errors, but the Patch Motion job still doesn’t work, I suggest you reinstall CUDA and retry the instructions above.

Let me know how that goes,

Nick

Motion Correction Error: AssertionError