Hi everyone,i was tring to install crysparc follow the instruction,it failed to launch and stalled here for 3hrs maybe.Did i make some mistake,how to fix it now?
ar -xf cryosparc_master.tar.gz cryosparc_master
tar -xf cryosparc_worker.tar.gz cryosparc_worker
(base) alonsus@alonsushome:~/cryosparc$ cd cryosparc_master
./install.sh --standalone \
--license XXXXXX \
--worker_path /home/alonsus/cryosparc/cryosparc_worker \
--ssdpath --nossd \
--initial_email alonsus@XXXXXXX \
--initial_username "weiqi zhao" \
--initial_firstname "weiqi" \
--initial_lastname "zhao" \
[--port 39000] \
[--initial_password XXXXXXX]
Unknown option:
--license: command not found
--worker_path: command not found
--ssdpath: command not found
--initial_email: command not found
(base) alonsus@alonsushome:~/cryosparc/cryosparc_master$ ./install.sh --standalone \
--license $LICENSE_ID \
--worker_path /home/alonsus/cryosparc/cryosparc_worker \
--ssdpath --nossd \
--initial_email"alonsus@XXXXXX" \
--initial_username "weiqi zhao" \
--initial_firstname "weiqi" \
--initial_lastname "zhao" \
--port 39000 \
--initial_password "XXXXXXXX"
Unknown option:
--license: command not found
--worker_path: command not found
--ssdpath: command not found
--initial_emailalonsus@zju.edu.cn: command not found
(base) alonsus@alonsushome:~/cryosparc/cryosparc_master$ ./install.sh --standalone \
--license $LICENSE_ID \
--worker_path /home/alonsus/cryosparc/cryosparc_worker \
--ssdpath --nossd \
--initial_email "alonsus@XXXX" \
--initial_username "weiqi zhao" \
--initial_firstname "weiqi" \
--initial_lastname "zhao" \
--port 39000 \
--initial_password "XXXXXX"
Unknown option:
--license: command not found
--worker_path: command not found
--ssdpath: command not found
--initial_email: command not found
(base) alonsus@alonsushome:~/cryosparc/cryosparc_master$ ./install.sh --standalone --worker_path /home/alonsus/cryosparc/cryosparc_worker --nossd ----initial_email "alonsus@XXXXX" ----initial_username "weiqi zhao" --initial_firstname "weiqi" --initial_lastname "zhao" --port 39000 --initial_password "XXXXXXXXXXX"
Unknown option: ----initial_email
(base) alonsus@alonsushome:~/cryosparc/cryosparc_master$ ./install.sh --standalone --worker_path /home/alonsus/cryosparc/cryosparc_worker --nossd --initial_email "alonsus@XXXXX" --initial_username "weiqi zhao" --initial_firstname "weiqi" --initial_lastname "zhao" --port 39000 --initial_password "XXXXXXXXXXX"
Error: No license ID provided.
(base) alonsus@alonsushome:~/cryosparc/cryosparc_master$ ./install.sh --standalone --worker_path /home/alonsus/cryosparc/cryosparc_worker --nossd --initial_email "alonsus@zju.edu.cn" --initial_username "weiqi zhao" --initial_firstname "weiqi" --initial_lastname "zhao" --port 39000 --initial_password "XXXXXXX" --license XXXXXX
************ CRYOSPARC SYSTEM: STANDALONE INSTALLER **************
Installation Settings:
License ID : XXXXXXX
Root Directory : /home/alonsus/cryosparc/cryosparc_master
Master Hostname : alonsushome
Database Directory : /home/alonsus/cryosparc/cryosparc_database
Base HTTP Port Number : 39000
Developer Install : false
Operating System : Linux
Insecure Install : false
Standalone Install : true
Worker Root Directory : /home/alonsus/cryosparc/cryosparc_worker
Initial User Email : alonsus@XXXXX
Initial User Name : weiqi zhao
Initial First Name : weiqi
Initial Last Name : zhao
SSD : false
Version : v4.5.3
******************************************************************
The CryoSPARC System master installation will host a database,
web application, and command layer for CryoSPARC, but will not
perform processing jobs.
Please read and confirm the above settings. The CryoSPARC database
will be stored at the database directory which is relative to the
root directory, unless provided as an absolute path.
You can change the database directory now by passing the --dbpath
parameter to this installer, or later via the command line.
Are the above settings correct?
1) Yes
2) No
#? 1
Continuing.
******************************************************************
Setting up hard-coded config.sh environment variables
******************************************************************
Installing all dependencies.
Warning: conda environment not found; this indicates that a cryoSPARC installation is either incomplete or in progress
Checking dependencies...
Dependencies for python have changed - reinstalling...
------------------------------------------------------------------------
Installing anaconda python...
------------------------------------------------------------------------
PREFIX=/home/alonsus/cryosparc/cryosparc_master/deps/anaconda
Unpacking payload ...
Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2
Extracting ca-certificates-2024.2.2-hbcca054_0.conda
Extracting ld_impl_linux-64-2.40-h41732ed_0.conda
Extracting libstdcxx-ng-13.2.0-h7e041cc_5.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.10-4_cp310.conda
Extracting tzdata-2024a-h0c530f3_0.conda
Extracting libgomp-13.2.0-h807b86a_5.conda
Extracting _openmp_mutex-4.5-2_gnu.tar.bz2
Extracting libgcc-ng-13.2.0-h807b86a_5.conda
Extracting bzip2-1.0.8-hd590300_5.conda
Extracting c-ares-1.27.0-hd590300_0.conda
Extracting fmt-10.2.1-h00ab1b0_0.conda
Extracting icu-73.2-h59595ed_0.conda
Extracting keyutils-1.6.1-h166bdaf_0.tar.bz2
Extracting libev-4.33-hd590300_2.conda
Extracting libffi-3.4.2-h7f98852_5.tar.bz2
Extracting libiconv-1.17-hd590300_2.conda
Extracting libnsl-2.0.1-hd590300_0.conda
Extracting libuuid-2.38.1-h0b41bf4_0.conda
Extracting libxcrypt-4.4.36-hd590300_1.conda
Extracting libzlib-1.2.13-hd590300_5.conda
Extracting lz4-c-1.9.4-hcb278e6_0.conda
Extracting lzo-2.10-h516909a_1000.tar.bz2
Extracting ncurses-6.4.20240210-h59595ed_0.conda
Extracting openssl-3.2.1-hd590300_1.conda
Extracting reproc-14.2.4.post0-hd590300_1.conda
Extracting xz-5.2.6-h166bdaf_0.tar.bz2
Extracting yaml-cpp-0.8.0-h59595ed_0.conda
Extracting libedit-3.1.20191231-he28a2e2_2.tar.bz2
Extracting libnghttp2-1.58.0-h47da74e_1.conda
Extracting libsolv-0.7.28-hfc55251_0.conda
Extracting libsqlite-3.45.2-h2797004_0.conda
Extracting libssh2-1.11.0-h0841786_0.conda
Extracting libxml2-2.12.6-h232c23b_0.conda
Extracting readline-8.2-h8228510_1.conda
Extracting reproc-cpp-14.2.4.post0-h59595ed_1.conda
Extracting tk-8.6.13-noxft_h4845f30_101.conda
Extracting zstd-1.5.5-hfc55251_0.conda
Extracting krb5-1.21.2-h659d440_0.conda
Extracting libarchive-3.7.2-h2aa1ff5_1.conda
Extracting python-3.10.14-hd12c33a_0_cpython.conda
Extracting libcurl-8.6.0-hca28451_0.conda
Extracting menuinst-2.0.2-py310hff52083_0.conda
Extracting archspec-0.2.3-pyhd8ed1ab_0.conda
Extracting boltons-23.1.1-pyhd8ed1ab_0.conda
Extracting brotli-python-1.1.0-py310hc6cd4ac_1.conda
Extracting certifi-2024.2.2-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
Extracting distro-1.9.0-pyhd8ed1ab_0.conda
Extracting idna-3.6-pyhd8ed1ab_0.conda
Extracting jsonpointer-2.4-py310hff52083_3.conda
Extracting libmamba-1.5.7-had39da4_0.conda
Extracting packaging-24.0-pyhd8ed1ab_0.conda
Extracting platformdirs-4.2.0-pyhd8ed1ab_0.conda
Extracting pluggy-1.4.0-pyhd8ed1ab_0.conda
Extracting pycosat-0.6.6-py310h2372a71_0.conda
Extracting pycparser-2.21-pyhd8ed1ab_0.tar.bz2
Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2
Extracting ruamel.yaml.clib-0.2.8-py310h2372a71_0.conda
Extracting setuptools-69.2.0-pyhd8ed1ab_0.conda
Extracting truststore-0.8.0-pyhd8ed1ab_0.conda
Extracting wheel-0.43.0-pyhd8ed1ab_0.conda
Extracting cffi-1.16.0-py310h2fee648_0.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda
Extracting libmambapy-1.5.7-py310h39ff949_0.conda
Extracting pip-24.0-pyhd8ed1ab_0.conda
Extracting ruamel.yaml-0.18.6-py310h2372a71_0.conda
Extracting tqdm-4.66.2-pyhd8ed1ab_0.conda
Extracting urllib3-2.2.1-pyhd8ed1ab_0.conda
Extracting requests-2.31.0-pyhd8ed1ab_0.conda
Extracting zstandard-0.22.0-py310h1275a96_0.conda
Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda
Extracting conda-package-handling-2.2.0-pyh38be061_0.conda
Extracting conda-24.1.2-py310hff52083_0.conda
Extracting conda-libmamba-solver-24.1.0-pyhd8ed1ab_0.conda
Extracting mamba-1.5.7-py310h51d5547_0.conda
Installing base environment...
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/ / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
/ /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
/ .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
/_/
Transaction
Prefix: /home/alonsus/cryosparc/cryosparc_master/deps/anaconda
Updating specs:
- conda-forge/linux-64::_libgcc_mutex==0.1=conda_forge[md5=d7c89558ba9fa0495403155b64376d81]
- conda-forge/linux-64::ca-certificates==2024.2.2=hbcca054_0[md5=2f4327a1cbe7f022401b236e915a5fef]
- conda-forge/linux-64::ld_impl_linux-64==2.40=h41732ed_0[md5=7aca3059a1729aa76c597603f10b0dd3]
- conda-forge/linux-64::libstdcxx-ng==13.2.0=h7e041cc_5[md5=f6f6600d18a4047b54f803cf708b868a]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/linux-64::python_abi==3.10=4_cp310[md5=26322ec5d7712c3ded99dd656142b8ce]
- conda-forge/noarch::tzdata==2024a=h0c530f3_0[md5=161081fc7cec0bfda0d86d7cb595f8d8]
- conda-forge/linux-64::libgomp==13.2.0=h807b86a_5[md5=d211c42b9ce49aee3734fdc828731689]
- conda-forge/linux-64::_openmp_mutex==4.5=2_gnu[md5=73aaf86a425cc6e73fcf236a5a46396d]
- conda-forge/linux-64::libgcc-ng==13.2.0=h807b86a_5[md5=d4ff227c46917d3b4565302a2bbb276b]
- conda-forge/linux-64::bzip2==1.0.8=hd590300_5[md5=69b8b6202a07720f448be700e300ccf4]
- conda-forge/linux-64::c-ares==1.27.0=hd590300_0[md5=f6afff0e9ee08d2f1b897881a4f38cdb]
- conda-forge/linux-64::fmt==10.2.1=h00ab1b0_0[md5=35ef8bc24bd34074ebae3c943d551728]
- conda-forge/linux-64::icu==73.2=h59595ed_0[md5=cc47e1facc155f91abd89b11e48e72ff]
- conda-forge/linux-64::keyutils==1.6.1=h166bdaf_0[md5=30186d27e2c9fa62b45fb1476b7200e3]
- conda-forge/linux-64::libev==4.33=hd590300_2[md5=172bf1cd1ff8629f2b1179945ed45055]
- conda-forge/linux-64::libffi==3.4.2=h7f98852_5[md5=d645c6d2ac96843a2bfaccd2d62b3ac3]
- conda-forge/linux-64::libiconv==1.17=hd590300_2[md5=d66573916ffcf376178462f1b61c941e]
- conda-forge/linux-64::libnsl==2.0.1=hd590300_0[md5=30fd6e37fe21f86f4bd26d6ee73eeec7]
- conda-forge/linux-64::libuuid==2.38.1=h0b41bf4_0[md5=40b61aab5c7ba9ff276c41cfffe6b80b]
- conda-forge/linux-64::libxcrypt==4.4.36=hd590300_1[md5=5aa797f8787fe7a17d1b0821485b5adc]
- conda-forge/linux-64::libzlib==1.2.13=hd590300_5[md5=f36c115f1ee199da648e0597ec2047ad]
- conda-forge/linux-64::lz4-c==1.9.4=hcb278e6_0[md5=318b08df404f9c9be5712aaa5a6f0bb0]
- conda-forge/linux-64::lzo==2.10=h516909a_1000[md5=bb14fcb13341b81d5eb386423b9d2bac]
- conda-forge/linux-64::ncurses==6.4.20240210=h59595ed_0[md5=97da8860a0da5413c7c98a3b3838a645]
- conda-forge/linux-64::openssl==3.2.1=hd590300_1[md5=9d731343cff6ee2e5a25c4a091bf8e2a]
- conda-forge/linux-64::reproc==14.2.4.post0=hd590300_1[md5=82ca53502dfd5a64a80dee76dae14685]
- conda-forge/linux-64::xz==5.2.6=h166bdaf_0[md5=2161070d867d1b1204ea749c8eec4ef0]
- conda-forge/linux-64::yaml-cpp==0.8.0=h59595ed_0[md5=965eaacd7c18eb8361fd12bb9e7a57d7]
- conda-forge/linux-64::libedit==3.1.20191231=he28a2e2_2[md5=4d331e44109e3f0e19b4cb8f9b82f3e1]
- conda-forge/linux-64::libnghttp2==1.58.0=h47da74e_1[md5=700ac6ea6d53d5510591c4344d5c989a]
- conda-forge/linux-64::libsolv==0.7.28=hfc55251_0[md5=66d4f5d8256542d9ebfa341d690c5e03]
- conda-forge/linux-64::libsqlite==3.45.2=h2797004_0[md5=866983a220e27a80cb75e85cb30466a1]
- conda-forge/linux-64::libssh2==1.11.0=h0841786_0[md5=1f5a58e686b13bcfde88b93f547d23fe]
- conda-forge/linux-64::libxml2==2.12.6=h232c23b_0[md5=d86653ff5ccb88bf7f13833fdd8789e0]
- conda-forge/linux-64::readline==8.2=h8228510_1[md5=47d31b792659ce70f470b5c82fdfb7a4]
- conda-forge/linux-64::reproc-cpp==14.2.4.post0=h59595ed_1[md5=715e1d720ec1a03715bebd237972fca5]
- conda-forge/linux-64::tk==8.6.13=noxft_h4845f30_101[md5=d453b98d9c83e71da0741bb0ff4d76bc]
- conda-forge/linux-64::zstd==1.5.5=hfc55251_0[md5=04b88013080254850d6c01ed54810589]
- conda-forge/linux-64::krb5==1.21.2=h659d440_0[md5=cd95826dbd331ed1be26bdf401432844]
- conda-forge/linux-64::libarchive==3.7.2=h2aa1ff5_1[md5=3bf887827d1968275978361a6e405e4f]
- conda-forge/linux-64::python==3.10.14=hd12c33a_0_cpython[md5=2b4ba962994e8bd4be9ff5b64b75aff2]
- conda-forge/linux-64::libcurl==8.6.0=hca28451_0[md5=704739398d858872cb91610f49f0ef29]
- conda-forge/linux-64::menuinst==2.0.2=py310hff52083_0[md5=4837faab0d3e665df57fef662148c6a3]
- conda-forge/noarch::archspec==0.2.3=pyhd8ed1ab_0[md5=192278292e20704f663b9c766909d67b]
- conda-forge/noarch::boltons==23.1.1=pyhd8ed1ab_0[md5=56febe65315cc388a5d20adf2b39a74d]
- conda-forge/linux-64::brotli-python==1.1.0=py310hc6cd4ac_1[md5=1f95722c94f00b69af69a066c7433714]
- conda-forge/noarch::certifi==2024.2.2=pyhd8ed1ab_0[md5=0876280e409658fc6f9e75d035960333]
- conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_0[md5=bbdb409974cd6cb30071b1d978302726]
- conda-forge/noarch::idna==3.6=pyhd8ed1ab_0[md5=1a76f09108576397c41c0b0c5bd84134]
- conda-forge/linux-64::jsonpointer==2.4=py310hff52083_3[md5=08ec1463dbc5c806a32fc431874032ca]
- conda-forge/linux-64::libmamba==1.5.7=had39da4_0[md5=9fff450354fbcd1510ef178730732241]
- conda-forge/noarch::packaging==24.0=pyhd8ed1ab_0[md5=248f521b64ce055e7feae3105e7abeb8]
- conda-forge/noarch::platformdirs==4.2.0=pyhd8ed1ab_0[md5=a0bc3eec34b0fab84be6b2da94e98e20]
- conda-forge/noarch::pluggy==1.4.0=pyhd8ed1ab_0[md5=139e9feb65187e916162917bb2484976]
- conda-forge/linux-64::pycosat==0.6.6=py310h2372a71_0[md5=0adaac9a86d59adae2bc86b3cdef2df1]
- conda-forge/noarch::pycparser==2.21=pyhd8ed1ab_0[md5=076becd9e05608f8dc72757d5f3a91ff]
- conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025]
- conda-forge/linux-64::ruamel.yaml.clib==0.2.8=py310h2372a71_0[md5=dcf6d2535586c77b31425ed835610c54]
- conda-forge/noarch::setuptools==69.2.0=pyhd8ed1ab_0[md5=da214ecd521a720a9d521c68047682dc]
- conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11]
- conda-forge/noarch::wheel==0.43.0=pyhd8ed1ab_0[md5=6e43a94e0ee67523b5e781f0faba5c45]
- conda-forge/linux-64::cffi==1.16.0=py310h2fee648_0[md5=45846a970e71ac98fd327da5d40a0a2c]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff]
- conda-forge/linux-64::libmambapy==1.5.7=py310h39ff949_0[md5=58d84efb37d517c64f4e48f75fd6180d]
- conda-forge/noarch::pip==24.0=pyhd8ed1ab_0[md5=f586ac1e56c8638b64f9c8122a7b8a67]
- conda-forge/linux-64::ruamel.yaml==0.18.6=py310h2372a71_0[md5=50b7d9b39099cdbabf65bf27df73a793]
- conda-forge/noarch::tqdm==4.66.2=pyhd8ed1ab_0[md5=2b8dfb969f984497f3f98409a9545776]
- conda-forge/noarch::urllib3==2.2.1=pyhd8ed1ab_0[md5=08807a87fa7af10754d46f63b368e016]
- conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b]
- conda-forge/linux-64::zstandard==0.22.0=py310h1275a96_0[md5=54698ba13cd3494547b289cd86a2176a]
- conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b]
- conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6]
- conda-forge/linux-64::conda==24.1.2=py310hff52083_0[md5=d7a8a166cf89ed19a7d3ee41b71a5d6f]
- conda-forge/noarch::conda-libmamba-solver==24.1.0=pyhd8ed1ab_0[md5=304dc78ad6e52e0fd663df1d484c1531]
- conda-forge/linux-64::mamba==1.5.7=py310h51d5547_0[md5=5977cafef2904d1588d0c23b94846f2c]
Package Version Build Channel Size
───────────────────────────────────────────────────────────────────────────────────────
Install:
───────────────────────────────────────────────────────────────────────────────────────
+ _libgcc_mutex 0.1 conda_forge conda-forge Cached
+ _openmp_mutex 4.5 2_gnu conda-forge Cached
+ archspec 0.2.3 pyhd8ed1ab_0 conda-forge Cached
+ boltons 23.1.1 pyhd8ed1ab_0 conda-forge Cached
+ brotli-python 1.1.0 py310hc6cd4ac_1 conda-forge Cached
+ bzip2 1.0.8 hd590300_5 conda-forge Cached
+ c-ares 1.27.0 hd590300_0 conda-forge Cached
+ ca-certificates 2024.2.2 hbcca054_0 conda-forge Cached
+ certifi 2024.2.2 pyhd8ed1ab_0 conda-forge Cached
+ cffi 1.16.0 py310h2fee648_0 conda-forge Cached
+ charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge Cached
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge Cached
+ conda 24.1.2 py310hff52083_0 conda-forge Cached
+ conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge Cached
+ conda-package-handling 2.2.0 pyh38be061_0 conda-forge Cached
+ conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge Cached
+ distro 1.9.0 pyhd8ed1ab_0 conda-forge Cached
+ fmt 10.2.1 h00ab1b0_0 conda-forge Cached
+ icu 73.2 h59595ed_0 conda-forge Cached
+ idna 3.6 pyhd8ed1ab_0 conda-forge Cached
+ jsonpatch 1.33 pyhd8ed1ab_0 conda-forge Cached
+ jsonpointer 2.4 py310hff52083_3 conda-forge Cached
+ keyutils 1.6.1 h166bdaf_0 conda-forge Cached
+ krb5 1.21.2 h659d440_0 conda-forge Cached
+ ld_impl_linux-64 2.40 h41732ed_0 conda-forge Cached
+ libarchive 3.7.2 h2aa1ff5_1 conda-forge Cached
+ libcurl 8.6.0 hca28451_0 conda-forge Cached
+ libedit 3.1.20191231 he28a2e2_2 conda-forge Cached
+ libev 4.33 hd590300_2 conda-forge Cached
+ libffi 3.4.2 h7f98852_5 conda-forge Cached
+ libgcc-ng 13.2.0 h807b86a_5 conda-forge Cached
+ libgomp 13.2.0 h807b86a_5 conda-forge Cached
+ libiconv 1.17 hd590300_2 conda-forge Cached
+ libmamba 1.5.7 had39da4_0 conda-forge Cached
+ libmambapy 1.5.7 py310h39ff949_0 conda-forge Cached
+ libnghttp2 1.58.0 h47da74e_1 conda-forge Cached
+ libnsl 2.0.1 hd590300_0 conda-forge Cached
+ libsolv 0.7.28 hfc55251_0 conda-forge Cached
+ libsqlite 3.45.2 h2797004_0 conda-forge Cached
+ libssh2 1.11.0 h0841786_0 conda-forge Cached
+ libstdcxx-ng 13.2.0 h7e041cc_5 conda-forge Cached
+ libuuid 2.38.1 h0b41bf4_0 conda-forge Cached
+ libxcrypt 4.4.36 hd590300_1 conda-forge Cached
+ libxml2 2.12.6 h232c23b_0 conda-forge Cached
+ libzlib 1.2.13 hd590300_5 conda-forge Cached
+ lz4-c 1.9.4 hcb278e6_0 conda-forge Cached
+ lzo 2.10 h516909a_1000 conda-forge Cached
+ mamba 1.5.7 py310h51d5547_0 conda-forge Cached
+ menuinst 2.0.2 py310hff52083_0 conda-forge Cached
+ ncurses 6.4.20240210 h59595ed_0 conda-forge Cached
+ openssl 3.2.1 hd590300_1 conda-forge Cached
+ packaging 24.0 pyhd8ed1ab_0 conda-forge Cached
+ pip 24.0 pyhd8ed1ab_0 conda-forge Cached
+ platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge Cached
+ pluggy 1.4.0 pyhd8ed1ab_0 conda-forge Cached
+ pybind11-abi 4 hd8ed1ab_3 conda-forge Cached
+ pycosat 0.6.6 py310h2372a71_0 conda-forge Cached
+ pycparser 2.21 pyhd8ed1ab_0 conda-forge Cached
+ pysocks 1.7.1 pyha2e5f31_6 conda-forge Cached
+ python 3.10.14 hd12c33a_0_cpython conda-forge Cached
+ python_abi 3.10 4_cp310 conda-forge Cached
+ readline 8.2 h8228510_1 conda-forge Cached
+ reproc 14.2.4.post0 hd590300_1 conda-forge Cached
+ reproc-cpp 14.2.4.post0 h59595ed_1 conda-forge Cached
+ requests 2.31.0 pyhd8ed1ab_0 conda-forge Cached
+ ruamel.yaml 0.18.6 py310h2372a71_0 conda-forge Cached
+ ruamel.yaml.clib 0.2.8 py310h2372a71_0 conda-forge Cached
+ setuptools 69.2.0 pyhd8ed1ab_0 conda-forge Cached
+ tk 8.6.13 noxft_h4845f30_101 conda-forge Cached
+ tqdm 4.66.2 pyhd8ed1ab_0 conda-forge Cached
+ truststore 0.8.0 pyhd8ed1ab_0 conda-forge Cached
+ tzdata 2024a h0c530f3_0 conda-forge Cached
+ urllib3 2.2.1 pyhd8ed1ab_0 conda-forge Cached
+ wheel 0.43.0 pyhd8ed1ab_0 conda-forge Cached
+ xz 5.2.6 h166bdaf_0 conda-forge Cached
+ yaml-cpp 0.8.0 h59595ed_0 conda-forge Cached
+ zstandard 0.22.0 py310h1275a96_0 conda-forge Cached
+ zstd 1.5.5 hfc55251_0 conda-forge Cached
Summary:
Install: 78 packages
Total download: 0 B
───────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Linking _libgcc_mutex-0.1-conda_forge
Linking ca-certificates-2024.2.2-hbcca054_0
Linking ld_impl_linux-64-2.40-h41732ed_0
Linking libstdcxx-ng-13.2.0-h7e041cc_5
Linking pybind11-abi-4-hd8ed1ab_3
Linking python_abi-3.10-4_cp310
Linking tzdata-2024a-h0c530f3_0
Linking libgomp-13.2.0-h807b86a_5
Linking _openmp_mutex-4.5-2_gnu
Linking libgcc-ng-13.2.0-h807b86a_5
Linking bzip2-1.0.8-hd590300_5
Linking c-ares-1.27.0-hd590300_0
Linking fmt-10.2.1-h00ab1b0_0
Linking icu-73.2-h59595ed_0
Linking keyutils-1.6.1-h166bdaf_0
Linking libev-4.33-hd590300_2
Linking libffi-3.4.2-h7f98852_5
Linking libiconv-1.17-hd590300_2
Linking libnsl-2.0.1-hd590300_0
Linking libuuid-2.38.1-h0b41bf4_0
Linking libxcrypt-4.4.36-hd590300_1
Linking libzlib-1.2.13-hd590300_5
Linking lz4-c-1.9.4-hcb278e6_0
Linking lzo-2.10-h516909a_1000
Linking ncurses-6.4.20240210-h59595ed_0
Linking openssl-3.2.1-hd590300_1
Linking reproc-14.2.4.post0-hd590300_1
Linking xz-5.2.6-h166bdaf_0
Linking yaml-cpp-0.8.0-h59595ed_0
Linking libedit-3.1.20191231-he28a2e2_2
Linking libnghttp2-1.58.0-h47da74e_1
Linking libsolv-0.7.28-hfc55251_0
Linking libsqlite-3.45.2-h2797004_0
Linking libssh2-1.11.0-h0841786_0
Linking libxml2-2.12.6-h232c23b_0
Linking readline-8.2-h8228510_1
Linking reproc-cpp-14.2.4.post0-h59595ed_1
Linking tk-8.6.13-noxft_h4845f30_101
Linking zstd-1.5.5-hfc55251_0
Linking krb5-1.21.2-h659d440_0
Linking libarchive-3.7.2-h2aa1ff5_1
Linking python-3.10.14-hd12c33a_0_cpython
Linking libcurl-8.6.0-hca28451_0
Linking menuinst-2.0.2-py310hff52083_0
Linking archspec-0.2.3-pyhd8ed1ab_0
Linking boltons-23.1.1-pyhd8ed1ab_0
Linking brotli-python-1.1.0-py310hc6cd4ac_1
Linking certifi-2024.2.2-pyhd8ed1ab_0
Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
Linking colorama-0.4.6-pyhd8ed1ab_0
Linking distro-1.9.0-pyhd8ed1ab_0
Linking idna-3.6-pyhd8ed1ab_0
Linking jsonpointer-2.4-py310hff52083_3
Linking libmamba-1.5.7-had39da4_0
Linking packaging-24.0-pyhd8ed1ab_0
Linking platformdirs-4.2.0-pyhd8ed1ab_0
Linking pluggy-1.4.0-pyhd8ed1ab_0
Linking pycosat-0.6.6-py310h2372a71_0
Linking pycparser-2.21-pyhd8ed1ab_0
Linking pysocks-1.7.1-pyha2e5f31_6
Linking ruamel.yaml.clib-0.2.8-py310h2372a71_0
Linking setuptools-69.2.0-pyhd8ed1ab_0
Linking truststore-0.8.0-pyhd8ed1ab_0
Linking wheel-0.43.0-pyhd8ed1ab_0
Linking cffi-1.16.0-py310h2fee648_0
Linking jsonpatch-1.33-pyhd8ed1ab_0
Linking libmambapy-1.5.7-py310h39ff949_0
Linking pip-24.0-pyhd8ed1ab_0
Linking ruamel.yaml-0.18.6-py310h2372a71_0
Linking tqdm-4.66.2-pyhd8ed1ab_0
Linking urllib3-2.2.1-pyhd8ed1ab_0
Linking requests-2.31.0-pyhd8ed1ab_0
Linking zstandard-0.22.0-py310h1275a96_0
Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
Linking conda-package-handling-2.2.0-pyh38be061_0
Linking conda-24.1.2-py310hff52083_0
Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
Linking mamba-1.5.7-py310h51d5547_0
Transaction finished
installation finished.
------------------------------------------------------------------------
Done.
anaconda python installation successful.
------------------------------------------------------------------------
Extracting all conda packages...
------------------------------------------------------------------------
..................................................................................................
------------------------------------------------------------------------
Done.
conda packages installation successful.
------------------------------------------------------------------------
Main dependency installation completed. Continuing...
------------------------------------------------------------------------
Completed.
Currently checking hash for mongodb
Dependencies for mongodb have changed - reinstalling...
------------------------------------------------------------------------
mongodb 3.6.23 installation successful.
------------------------------------------------------------------------
Completed.
Completed dependency check.
************ CRYOSPARC MASTER INSTALLATION COMPLETE **************
CryoSPARC System master has now been installed.
Add bin directory to your ~/.bashrc ?
1) Yes
2) No
#? 1
cryosparc bin directory already in PATH, skipped.
************ CRYOSPARC SYSTEM: STANDALONE INSTALLER **************
The installer will now download, install and connect the worker
package on this machine. The worker package will allow CryoSPARC
to run compute jobs.
******************************************************************
Starting CryoSPARC...
Starting CryoSPARC System master process...
CryoSPARC is not already running.
configuring database...
creating cryosparc_admin
cryosparc_admin created
creating cryosparc_user
cryosparc_user created
configuration complete
database: started
database OK
command_core: started