my job has been stuck on “optimize fsc masks” for about 6 hours so far. No sign of a change.
I have ~20k particles, box 512. I have run many refinements on this data no problem.
The only difference this time is I took one of the maps into chimera and resampled on a different axis so I can apply symmetry in the way I want. The new map imported just fine, but now when I run the job it just hangs on iteration 0.
Tried legacy or new homo refine, same issue for both.