Reference-based motion correction timing out

Troubleshooting
1

Hi. I’m running NU-refinement using reference-based motion-corrected particles and a volume/mask from a previous NU refinement. It runs for ~30 min then fails with a “job is unresponsive, no heartbeat error.”

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2

Welcome to the forum @jstagno .
Please can you post the outputs of these commands (on the CryoSPARC master):

projectid=P99 # replace with actual project ID
jobid=J199 # replace with actual job ID
cryosparcm cli "get_scheduler_targets()"
cryosparcm eventlog $projectid $jobid | head -n 40
cryosparcm joblog $projectid $jobid | tail -n 20
3

The issue turned out to be too large a box size. Thank you @olibclarke for catching this!