So I have just finished my 3D variability job and have a nice density map that displays conformational change. As a newbie, I am curious to hear your recommendations on creating a moving model. I have read that Climber is a good software, but I’m not sure it is appropriate given that I know intermediate conformations of the protein. What are your thoughts?
I’m also interested in this topic, if anybody has experience with it. Specially tips for new users with absolutely no experience! Thanks
(remember to first send your 3D Variability job outputs to a “3D Variability Display” job and download those outputs to load in Chimera)
I’ll let others chime in with any tools they use or are aware of beyond Chimera.