Hi,
I noticed a strange behavior of RBMC. It now removes the micrographs with less than 2 particles, but then it removes the particles that are too close to the edge. That creates an issue that if the micrograph has less than 2 particles, it triggers an error later. Could you reverse the order of checks and first remove particles too close to the edge and then remove micrographs with less than 2 particles?
Here is the error log:
[CPU: 618.1 MB Avail: 374.56 GB]
Resolution cutoffs: alignment 3.618 A, cross-validation 2.558 A
[CPU: 1.51 GB Avail: 373.67 GB]
Removed 304 movies with fewer than 2 particles.
[CPU: 1.51 GB Avail: 373.67 GB]
Recentering particles based on their aligned 3D poses...
[CPU: 1.52 GB Avail: 373.65 GB]
Removing 115 particles too close to micrograph edges
[CPU: 1.56 GB Avail: 373.61 GB]
--------------------------------------------------------------
STARTING: OPTIMIZE HYPERPARAMETERS
--------------------------------------------------------------
[CPU: 1.57 GB Avail: 373.61 GB]
Working with 611 movies containing 12505 particles
[CPU: 1.57 GB Avail: 373.61 GB]
Computing intended data cache configuration
[CPU: 1.74 GB Avail: 373.43 GB]
SEARCH RANGES:
zs:
6.2146
thetas:
-2.0420
-2.1468
-2.2515
-2.3562
-2.4609
-2.5656
-2.6704
r start:
0.1000
r end:
10.0000
r step:
0.6600
[CPU: 1.74 GB Avail: 373.43 GB]
==================== BEGINNING ITERATION 1 ====================
[CPU: 1.74 GB Avail: 373.43 GB]
Iteration overview (parameters to be tried):
---r--- -theta- ---z--- | -spatial- -dist.- --accel--
0.100 -2.042 6.215 | 9.56e-01 500 9.15e-01
0.100 -2.147 6.215 | 9.47e-01 500 9.20e-01
0.100 -2.251 6.215 | 9.39e-01 500 9.25e-01
0.100 -2.356 6.215 | 9.32e-01 500 9.32e-01
0.100 -2.461 6.215 | 9.25e-01 500 9.39e-01
0.100 -2.566 6.215 | 9.20e-01 500 9.47e-01
0.100 -2.670 6.215 | 9.15e-01 500 9.56e-01
[CPU: 1.74 GB Avail: 373.43 GB]
Cross-validation scores computed:
[▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇------------------------------] 2714/4277 (63%)
[CPU: 140.7 MB Avail: 293.04 GB]
====== Job process terminated abnormally.
[CPU: 80.0 MB Avail: 330.87 GB]
DIE: [refmotion worker 0 (NVIDIA GeForce RTX 2080 Ti)] fatal error: Specified micrograph has less than two particles.
movie 2753190026260728902: S1/import_movies/FoilHole_4867075_Data_3843839_3843841_20240605_132911_fractions.tiff
Thanks!
Dawid
