Hi,
I’m running into a similar error during extraction. We are running cryosparc v4.6.2. Please advice.
[CPU: 260.0 MB]
Traceback (most recent call last):
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File “/fsx/topaz”, line 33, in
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sys.exit(load_entry_point(‘topaz-em==0.2.5’, ‘console_scripts’, ‘topaz’)())
[CPU: 260.0 MB]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[CPU: 260.0 MB]
File “/apps/software/miniforge3/envs/topaz-0.2.5/lib/python3.11/site-packages/topaz/main.py”, line 148, in main
[CPU: 260.0 MB]
args.func(args)
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File “/apps/software/miniforge3/envs/topaz-0.2.5/lib/python3.11/site-packages/topaz/commands/extract.py”, line 288, in main
[CPU: 260.0 MB]
for path,score,coords in nms_iterator(stream, radius, threshold, pool=pool):
[CPU: 260.0 MB]
File “/apps/software/miniforge3/envs/topaz-0.2.5/lib/python3.11/site-packages/topaz/commands/extract.py”, line 79, in nms_iterator
[CPU: 260.0 MB]
for name,score,coords in pool.imap_unordered(process, scores):
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File “/apps/software/miniforge3/envs/topaz-0.2.5/lib/python3.11/multiprocessing/pool.py”, line 873, in next
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raise value
[CPU: 260.0 MB]
File “/apps/software/miniforge3/envs/topaz-0.2.5/lib/python3.11/multiprocessing/pool.py”, line 540, in _handle_tasks
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put(task)
[CPU: 260.0 MB]
File “/apps/software/miniforge3/envs/topaz-0.2.5/lib/python3.11/multiprocessing/connection.py”, line 206, in send
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self._send_bytes(_ForkingPickler.dumps(obj))
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^^^^^^^^^^^^^^^^^^^^^^^^^^
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File “/apps/software/miniforge3/envs/topaz-0.2.5/lib/python3.11/multiprocessing/reduction.py”, line 51, in dumps
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cls(buf, protocol).dump(obj)
[CPU: 260.0 MB]
_pickle.PicklingError: Can’t pickle <class ‘pkg_resources.DistributionNotFound’>: import of module ‘pkg_resources’ failed