Hi
I am running the tutorial with T20 proteasome data set and could not get past motion correction.
The Patch motion correction is giving the following error and output.
Could you please help me fix this?
Error:
Traceback (most recent call last):
File “cryosparc2_compute/jobs/runcommon.py”, line 1490, in run_with_except_hook
run_old(*args, **kw)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/threading.py”, line 754, in run
self.__target(*self.__args, **self.__kwargs)
File “cryosparc2_compute/jobs/pipeline.py”, line 153, in thread_work
work = processor.process(item)
File “cryosparc2_worker/cryosparc2_compute/jobs/motioncorrection/run_patch.py”, line 154, in cryosparc2_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi.motionworker.process
File “cryosparc2_worker/cryosparc2_compute/jobs/motioncorrection/run_patch.py”, line 157, in cryosparc2_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi.motionworker.process
File “cryosparc2_worker/cryosparc2_compute/jobs/motioncorrection/run_patch.py”, line 158, in cryosparc2_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi.motionworker.process
File “cryosparc2_worker/cryosparc2_compute/jobs/motioncorrection/patchmotion.py”, line 77, in cryosparc2_compute.jobs.motioncorrection.patchmotion.unbend_motion_correction
File “cryosparc2_worker/cryosparc2_compute/jobs/motioncorrection/patchmotion.py”, line 103, in cryosparc2_compute.jobs.motioncorrection.patchmotion.unbend_motion_correction
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/gpuarray.py”, line 549, in fill
func = elementwise.get_fill_kernel(self.dtype)
File “”, line 2, in get_fill_kernel
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/tools.py”, line 432, in context_dependent_memoize
result = func(*args)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/elementwise.py”, line 496, in get_fill_kernel
“fill”)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/elementwise.py”, line 161, in get_elwise_kernel
arguments, operation, name, keep, options, **kwargs)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/elementwise.py”, line 147, in get_elwise_kernel_and_types
keep, options, **kwargs)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/elementwise.py”, line 75, in get_elwise_module
options=options, keep=keep)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/compiler.py”, line 291, in init
arch, code, cache_dir, include_dirs)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/compiler.py”, line 254, in compile
return compile_plain(source, options, keep, nvcc, cache_dir, target)
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/compiler.py”, line 78, in compile_plain
checksum.update(preprocess_source(source, options, nvcc).encode(“utf-8”))
File “/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/compiler.py”, line 55, in preprocess_source
cmdline, stderr=stderr)
CompileError: nvcc preprocessing of /tmp/tmpc0x99R.cu failed
[command: nvcc --preprocess -arch sm_75 -I/media/raid/cryosparc2/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/pycuda/cuda /tmp/tmpc0x99R.cu --compiler-options -P]
[stderr:
nvcc fatal : Value ‘sm_75’ is not defined for option ‘gpu-architecture’
]
Output:
Traceback (most recent call last):
File “cryosparc2_worker/cryosparc2_compute/run.py”, line 78, in cryosparc2_compute.run.main
File “cryosparc2_worker/cryosparc2_compute/jobs/motioncorrection/run_patch.py”, line 312, in cryosparc2_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi
AssertionError: Child process with PID 141055 has terminated unexpectedly!
Thanks
Regards
AP