Mismatch in number of particles

Cryo-EM Data Processing
1

I am encountering a weird case in which the output number of particles differs quite significantly from the input. This is also reflected in the logfile, where not all particles are being read:

[CPU: 1.01 GB] Loading a ParticleStack with 917110 items…

Any explanations for this or is it simply a bug? I’m running v4.7.1.

Thanks~

mismatch
mismatch3020×664 182 KB

2

Hi Jason,

I would guess there is some overlap between the two classes supplied as inputs, and it is taking the union?

Cheers

Oli

3

I suspected that as well, but when I run find duplicate particles, it finds none.

4

That is odd.. how about Particles Sets, with intersect option? Perhaps remove duplicates is not flagging them as duplicates because they are literally the same particle, with the same UUID?

5

Yes, you were right. Particle intersect shows the overlap. Thanks!