Live exposure export leads to denoise jobs failing

CryoSPARC Live
1

Hi,

I am unable to use micrographs exported from a live session for any downstream motioncorrect or denoiser jobs. I get the following errors:

Patch motion error when micrographs from live export are input for training:

Traceback (most recent call last): File "cryosparc_master/cryosparc_compute/run.py", line 129, in cryosparc_master.cryosparc_compute.run.main File "cryosparc_master/cryosparc_compute/jobs/motioncorrection/run_patch.py", line 46, in cryosparc_master.cryosparc_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi AttributeError: 'NoneType' object has no attribute 'add_fields'

Denoiser error using model from another job and micrographs from live export:

Traceback (most recent call last): File "cryosparc_master/cryosparc_compute/run.py", line 129, in cryosparc_master.cryosparc_compute.run.main File "cryosparc_master/cryosparc_compute/jobs/micrograph_analysis/run_denoise.py", line 79, in cryosparc_master.cryosparc_compute.jobs.micrograph_analysis.run_denoise.run_train TypeError: object of type 'NoneType' has no len()

This occurs for any jobs using the micrographs from the live export, re-running a fresh live export still causes the same problem. I found a similar problem here that was caused by a directory mismatch, but we get the same problem with this data on another workstation that is not using a master/worker node setup.

2

Hi @mm98 Please can you post the outputs of these commands that refer to relevant Live Exposure Export and Patch Motion Correction jobs:

csprojectid=P99 # replace with actual project ID
exportid=J199 # replace with ID of relevant upstream live exposure export job
pmcid=J200 # replace with ID of failed patch motion correction job
cryosparcm cli "get_job('$csprojectid', '$exportid', 'job_type', 'version', 'status',  'params_spec', 'errors_run', 'input_slot_groups.connections', 'cloned_from', 'output_result_groups', 'started_at')"
cryosparcm cli "get_job('$csprojectid', '$pmcid', 'job_type', 'version', 'status',  'params_spec', 'errors_run', 'input_slot_groups.connections', 'cloned_from', 'output_result_groups', 'started_at')"
cryosparcm eventlog $csprojectid $pmcid | tail -n 40
3

Sure, I have split the output below into multiple replies to avoid exceeding the character limit. For now the fix we have found is to put the micrographs from the live export into a curate exposures job. Exposures output from this job can be used for downstream processing without any problems.

$ cryosparcm cli "get_job('$csprojectid', '$exportid', 'job_type', 'version', 'status',  'params_spec', 'errors_run', 'input_slot_groups.connections', 'cloned_from', 'output_result_groups', 'started_at')"
$ csprojectid=P16
$ exportid=J2042
$ pmcid=J2043
{'_id': '693f55a2deb74d07ec330171', 'cloned_from': None, 'errors_run': [], 'input_slot_groups': [{'connections': [{'group_name': 'live', 'job_uid': 'J2012', 'slots': [{'group_name': 'live', 'job_uid': 'J2012', 'result_name': 'session_info', 'result_type': 'live.session_info', 'slot_name': None, 'version': 'F'}]}]}], 'job_type': 'export_live_exposures', 'output_result_groups': [{'contains': [{'group_name': 'all_exposures', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R0'}, {'group_name': 'all_exposures', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R1'}, {'group_name': 'all_exposures', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R2'}, {'group_name': 'all_exposures', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R3'}, {'group_name': 'all_exposures', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R4'}, {'group_name': 'all_exposures', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R5'}, {'group_name': 'all_exposures', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R6'}, {'group_name': 'all_exposures', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R7'}, {'group_name': 'all_exposures', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R8'}, {'group_name': 'all_exposures', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R9'}, {'group_name': 'all_exposures', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R10'}], 'description': '', 'name': 'all_exposures', 'num_items': 18481, 'passthrough': False, 'summary': {'background_blob/binfactor': 4, 'background_blob/psize_A': 0.718999981880188, 'background_blob/shape': [4096, 4096], 'ctf/accel_kv': 300.0, 'ctf/amp_contrast': 0.10000000149011612, 'ctf/cs_mm': 2.700000047683716, 'ctf/phase_shift_rad': 0.0, 'ctf/type': 'spline', 'ctf_stats/spectrum_dim': 1440, 'ctf_stats/type': 'spline', 'gain_ref_blob/flip_x': 0, 'gain_ref_blob/flip_y': 0, 'gain_ref_blob/rotate_num': 0, 'gain_ref_blob/shape': [4096, 4096], 'micrograph_blob/format': 'MRC/2', 'micrograph_blob/is_background_subtracted': 1, 'micrograph_blob/psize_A': 0.718999981880188, 'micrograph_blob/shape': [4096, 4096], 'micrograph_blob_non_dw/format': 'MRC/2', 'micrograph_blob_non_dw/is_background_subtracted': 1, 'micrograph_blob_non_dw/psize_A': 0.718999981880188, 'micrograph_blob_non_dw/shape': [4096, 4096], 'micrograph_blob_thumb/format': 'MRC/2', 'micrograph_blob_thumb/is_background_subtracted': 1, 'micrograph_blob_thumb/psize_A': 0.718999981880188, 'micrograph_blob_thumb/shape': [1024, 1024], 'movie_blob/format': 'EER/4096', 'movie_blob/has_defect_file': 0, 'movie_blob/is_gain_corrected': 0, 'movie_blob/psize_A': 0.718999981880188, 'movie_blob/shape': [40, 4096, 4096], 'mscope_params/accel_kv': 300.0, 'mscope_params/cs_mm': 2.700000047683716, 'mscope_params/neg_stain': 0, 'mscope_params/phase_plate': 0, 'mscope_params/total_dose_e_per_A2': 50.0, 'rigid_motion/frame_end': 40, 'rigid_motion/frame_start': 0, 'rigid_motion/psize_A': 0.718999981880188, 'rigid_motion/type': 'rigid', 'rigid_motion/zero_shift_frame': 0, 'spline_motion/frame_end': 40, 'spline_motion/frame_start': 0, 'spline_motion/psize_A': 0.718999981880188, 'spline_motion/type': 'spline', 'spline_motion/zero_shift_frame': 0}, 'title': 'All Exposures', 'type': 'exposure', 'uid': 'J2042-G0'}, {'contains': [{'group_name': 'accepted_exposures', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R11'}, {'group_name': 'accepted_exposures', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R12'}, {'group_name': 'accepted_exposures', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R13'}, {'group_name': 'accepted_exposures', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R14'}, {'group_name': 'accepted_exposures', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R15'}, {'group_name': 'accepted_exposures', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R16'}, {'group_name': 'accepted_exposures', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R17'}, {'group_name': 'accepted_exposures', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R18'}, {'group_name': 'accepted_exposures', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R19'}, {'group_name': 'accepted_exposures', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R20'}, {'group_name': 'accepted_exposures', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R21'}], 'description': '', 'name': 'accepted_exposures', 'num_items': 16509, 'passthrough': False, 'summary': {'background_blob/binfactor': 4, 'background_blob/psize_A': 0.718999981880188, 'background_blob/shape': [4096, 4096], 'ctf/accel_kv': 300.0, 'ctf/amp_contrast': 0.10000000149011612, 'ctf/cs_mm': 2.700000047683716, 'ctf/phase_shift_rad': 0.0, 'ctf/type': 'spline', 'ctf_stats/spectrum_dim': 1440, 'ctf_stats/type': 'spline', 'gain_ref_blob/flip_x': 0, 'gain_ref_blob/flip_y': 0, 'gain_ref_blob/rotate_num': 0, 'gain_ref_blob/shape': [4096, 4096], 'micrograph_blob/format': 'MRC/2', 'micrograph_blob/is_background_subtracted': 1, 'micrograph_blob/psize_A': 0.718999981880188, 'micrograph_blob/shape': [4096, 4096], 'micrograph_blob_non_dw/format': 'MRC/2', 'micrograph_blob_non_dw/is_background_subtracted': 1, 'micrograph_blob_non_dw/psize_A': 0.718999981880188, 'micrograph_blob_non_dw/shape': [4096, 4096], 'micrograph_blob_thumb/format': 'MRC/2', 'micrograph_blob_thumb/is_background_subtracted': 1, 'micrograph_blob_thumb/psize_A': 0.718999981880188, 'micrograph_blob_thumb/shape': [1024, 1024], 'movie_blob/format': 'EER/4096', 'movie_blob/has_defect_file': 0, 'movie_blob/is_gain_corrected': 0, 'movie_blob/psize_A': 0.718999981880188, 'movie_blob/shape': [40, 4096, 4096], 'mscope_params/accel_kv': 300.0, 'mscope_params/cs_mm': 2.700000047683716, 'mscope_params/neg_stain': 0, 'mscope_params/phase_plate': 0, 'mscope_params/total_dose_e_per_A2': 50.0, 'rigid_motion/frame_end': 40, 'rigid_motion/frame_start': 0, 'rigid_motion/psize_A': 0.718999981880188, 'rigid_motion/type': 'rigid', 'rigid_motion/zero_shift_frame': 0, 'spline_motion/frame_end': 40, 'spline_motion/frame_start': 0, 'spline_motion/psize_A': 0.718999981880188, 'spline_motion/type': 'spline', 'spline_motion/zero_shift_frame': 0}, 'title': 'Accepted Exposures', 'type': 'exposure', 'uid': 'J2042-G1'}, {'contains': [{'group_name': 'rejected_exposures', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R22'}, {'group_name': 'rejected_exposures', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R23'}, {'group_name': 'rejected_exposures', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R24'}, {'group_name': 'rejected_exposures', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R25'}, {'group_name': 'rejected_exposures', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R26'}, {'group_name': 'rejected_exposures', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R27'}, {'group_name': 'rejected_exposures', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R28'}, {'group_name': 'rejected_exposures', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R29'}, {'group_name': 'rejected_exposures', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R30'}, {'group_name': 'rejected_exposures', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R31'}, {'group_name': 'rejected_exposures', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R32'}], 'description': '', 'name': 'rejected_exposures', 'num_items': 1979, 'passthrough': False, 'summary': {'background_blob/binfactor': 4, 'background_blob/psize_A': 0.718999981880188, 'background_blob/shape': [4096, 4096], 'ctf/accel_kv': 300.0, 'ctf/amp_contrast': 0.10000000149011612, 'ctf/cs_mm': 2.700000047683716, 'ctf/phase_shift_rad': 0.0, 'ctf/type': 'spline', 'ctf_stats/spectrum_dim': 1440, 'ctf_stats/type': 'spline', 'gain_ref_blob/flip_x': 0, 'gain_ref_blob/flip_y': 0, 'gain_ref_blob/rotate_num': 0, 'gain_ref_blob/shape': [4096, 4096], 'micrograph_blob/format': 'MRC/2', 'micrograph_blob/is_background_subtracted': 1, 'micrograph_blob/psize_A': 0.718999981880188, 'micrograph_blob/shape': [4096, 4096], 'micrograph_blob_non_dw/format': 'MRC/2', 'micrograph_blob_non_dw/is_background_subtracted': 1, 'micrograph_blob_non_dw/psize_A': 0.718999981880188, 'micrograph_blob_non_dw/shape': [4096, 4096], 'micrograph_blob_thumb/format': 'MRC/2', 'micrograph_blob_thumb/is_background_subtracted': 1, 'micrograph_blob_thumb/psize_A': 0.718999981880188, 'micrograph_blob_thumb/shape': [1024, 1024], 'movie_blob/format': 'EER/4096', 'movie_blob/has_defect_file': 0, 'movie_blob/is_gain_corrected': 0, 'movie_blob/psize_A': 0.718999981880188, 'movie_blob/shape': [40, 4096, 4096], 'mscope_params/accel_kv': 300.0, 'mscope_params/cs_mm': 2.700000047683716, 'mscope_params/neg_stain': 0, 'mscope_params/phase_plate': 0, 'mscope_params/total_dose_e_per_A2': 50.0, 'rigid_motion/frame_end': 40, 'rigid_motion/frame_start': 0, 'rigid_motion/psize_A': 0.718999981880188, 'rigid_motion/type': 'rigid', 'rigid_motion/zero_shift_frame': 0, 'spline_motion/frame_end': 40, 'spline_motion/frame_start': 0, 'spline_motion/psize_A': 0.718999981880188, 'spline_motion/type': 'spline', 'spline_motion/zero_shift_frame': 0}, 'title': 'Rejected Exposures', 'type': 'exposure', 'uid': 'J2042-G2'}, {'contains': [{'group_name': 'manual_rejected_exposures', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R33'}, {'group_name': 'manual_rejected_exposures', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R34'}, {'group_name': 'manual_rejected_exposures', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R35'}, {'group_name': 'manual_rejected_exposures', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R36'}, {'group_name': 'manual_rejected_exposures', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R37'}, {'group_name': 'manual_rejected_exposures', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R38'}, {'group_name': 'manual_rejected_exposures', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R39'}, {'group_name': 'manual_rejected_exposures', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R40'}, {'group_name': 'manual_rejected_exposures', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R41'}, {'group_name': 'manual_rejected_exposures', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R42'}, {'group_name': 'manual_rejected_exposures', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R43'}], 'description': '', 'name': 'manual_rejected_exposures', 'num_items': 0, 'passthrough': False, 'summary': {}, 'title': 'Manually Rejected Exposures', 'type': 'exposure', 'uid': 'J2042-G3'}, {'contains': [{'group_name': 'all_exposures_group_2', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R44'}, {'group_name': 'all_exposures_group_2', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R45'}, {'group_name': 'all_exposures_group_2', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R46'}, {'group_name': 'all_exposures_group_2', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R47'}, {'group_name': 'all_exposures_group_2', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R48'}, {'group_name': 'all_exposures_group_2', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R49'}, {'group_name': 'all_exposures_group_2', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R50'}, {'group_name': 'all_exposures_group_2', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R51'}, {'group_name': 'all_exposures_group_2', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R52'}, {'group_name': 'all_exposures_group_2', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R53'}, {'group_name': 'all_exposures_group_2', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R54'}], 'description': '', 'name': 'all_exposures_group_2', 'num_items': 5085, 'passthrough': False, 'summary': {}, 'title': 'All Exposures in Exposure Group 2', 'type': 'exposure', 'uid': 'J2042-G4'}, {'contains': [{'group_name': 'accepted_exposures_group_2', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R55'}, {'group_name': 'accepted_exposures_group_2', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R56'}, {'group_name': 'accepted_exposures_group_2', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R57'}, {'group_name': 'accepted_exposures_group_2', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R58'}, {'group_name': 'accepted_exposures_group_2', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R59'}, {'group_name': 'accepted_exposures_group_2', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R60'}, {'group_name': 'accepted_exposures_group_2', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R61'}, {'group_name': 'accepted_exposures_group_2', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R62'}, {'group_name': 'accepted_exposures_group_2', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R63'}, {'group_name': 'accepted_exposures_group_2', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R64'}, {'group_name': 'accepted_exposures_group_2', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R65'}], 'description': '', 'name': 'accepted_exposures_group_2', 'num_items': 4073, 'passthrough': False, 'summary': {}, 'title': 'Accepted Exposures in Exposure Group 2', 'type': 'exposure', 'uid': 'J2042-G5'}, {'contains': [{'group_name': 'rejected_exposures_group_2', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R66'}, {'group_name': 'rejected_exposures_group_2', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R67'}, {'group_name': 'rejected_exposures_group_2', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R68'}, {'group_name': 'rejected_exposures_group_2', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R69'}, {'group_name': 'rejected_exposures_group_2', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R70'}, {'group_name': 'rejected_exposures_group_2', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R71'}, {'group_name': 'rejected_exposures_group_2', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R72'}, {'group_name': 'rejected_exposures_group_2', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R73'}, {'group_name': 'rejected_exposures_group_2', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R74'}, {'group_name': 'rejected_exposures_group_2', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R75'}, {'group_name': 'rejected_exposures_group_2', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R76'}], 'description': '', 'name': 'rejected_exposures_group_2', 'num_items': 1012, 'passthrough': False, 'summary': {}, 'title': 'Rejected Exposures in Exposure Group 2', 'type': 'exposure', 'uid': 'J2042-G6'}, {'contains': [{'group_name': 'manual_rejected_exposures_group_2', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R77'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R78'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R79'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R80'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R81'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R82'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R83'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R84'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R85'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R86'}, {'group_name': 'manual_rejected_exposures_group_2', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R87'}], 'description': '', 'name': 'manual_rejected_exposures_group_2', 'num_items': 0, 'passthrough': False, 'summary': {}, 'title': 'Manual_Rejected Exposures in Exposure Group 2', 'type': 'exposure', 'uid': 'J2042-G7'}, {'contains': [{'group_name': 'all_exposures_group_3', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R88'}, {'group_name': 'all_exposures_group_3', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R89'}, {'group_name': 'all_exposures_group_3', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R90'}, {'group_name': 'all_exposures_group_3', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R91'}, {'group_name': 'all_exposures_group_3', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R92'}, {'group_name': 'all_exposures_group_3', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R93'}, {'group_name': 'all_exposures_group_3', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R94'}, {'group_name': 'all_exposures_group_3', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R95'}, {'group_name': 'all_exposures_group_3', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R96'}, {'group_name': 'all_exposures_group_3', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R97'}, {'group_name': 'all_exposures_group_3', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R98'}], 'description': '', 'name': 'all_exposures_group_3', 'num_items': 10201, 'passthrough': False, 'summary': {}, 'title': 'All Exposures in Exposure Group 3', 'type': 'exposure', 'uid': 'J2042-G8'}, {'contains': [{'group_name': 'accepted_exposures_group_3', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R99'}, {'group_name': 'accepted_exposures_group_3', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R100'}, {'group_name': 'accepted_exposures_group_3', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R101'}, {'group_name': 'accepted_exposures_group_3', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R102'}, {'group_name': 'accepted_exposures_group_3', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R103'}, {'group_name': 'accepted_exposures_group_3', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R104'}, {'group_name': 'accepted_exposures_group_3', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R105'}, {'group_name': 'accepted_exposures_group_3', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R106'}, {'group_name': 'accepted_exposures_group_3', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R107'}, {'group_name': 'accepted_exposures_group_3', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R108'}, {'group_name': 'accepted_exposures_group_3', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R109'}], 'description': '', 'name': 'accepted_exposures_group_3', 'num_items': 9415, 'passthrough': False, 'summary': {}, 'title': 'Accepted Exposures in Exposure Group 3', 'type': 'exposure', 'uid': 'J2042-G9'}, {'contains': [{'group_name': 'rejected_exposures_group_3', 'name': 'movie_blob', 'passthrough': False, 'type': 'exposure.movie_blob', 'uid': 'J2042-R110'}, {'group_name': 'rejected_exposures_group_3', 'name': 'gain_ref_blob', 'passthrough': False, 'type': 'exposure.gain_ref_blob', 'uid': 'J2042-R111'}, {'group_name': 'rejected_exposures_group_3', 'name': 'mscope_params', 'passthrough': False, 'type': 'exposure.mscope_params', 'uid': 'J2042-R112'}, {'group_name': 'rejected_exposures_group_3', 'name': 'micrograph_blob', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R113'}, {'group_name': 'rejected_exposures_group_3', 'name': 'micrograph_blob_non_dw', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R114'}, {'group_name': 'rejected_exposures_group_3', 'name': 'background_blob', 'passthrough': False, 'type': 'exposure.stat_blob', 'uid': 'J2042-R115'}, {'group_name': 'rejected_exposures_group_3', 'name': 'rigid_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R116'}, {'group_name': 'rejected_exposures_group_3', 'name': 'spline_motion', 'passthrough': False, 'type': 'exposure.motion', 'uid': 'J2042-R117'}, {'group_name': 'rejected_exposures_group_3', 'name': 'micrograph_blob_thumb', 'passthrough': False, 'type': 'exposure.micrograph_blob', 'uid': 'J2042-R118'}, {'group_name': 'rejected_exposures_group_3', 'name': 'ctf', 'passthrough': False, 'type': 'exposure.ctf', 'uid': 'J2042-R119'}, {'group_name': 'rejected_exposures_group_3', 'name': 'ctf_stats', 'passthrough': False, 'type': 'exposure.ctf_stats', 'uid': 'J2042-R120'}], 'description': '', 'name': 'rejected_exposures_group_3', 'num_items': 786, 'passthrough': False, 'summary': {},
4

Continued from above:

‘title’: ‘Rejected Exposures in Exposure Group 3’, ‘type’: ‘exposure’, ‘uid’: ‘J2042-G10’}, {‘contains’: [{‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘movie_blob’, ‘passthrough’: False, ‘type’: ‘exposure.movie_blob’, ‘uid’: ‘J2042-R121’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘gain_ref_blob’, ‘passthrough’: False, ‘type’: ‘exposure.gain_ref_blob’, ‘uid’: ‘J2042-R122’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘mscope_params’, ‘passthrough’: False, ‘type’: ‘exposure.mscope_params’, ‘uid’: ‘J2042-R123’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘micrograph_blob’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R124’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘micrograph_blob_non_dw’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R125’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘background_blob’, ‘passthrough’: False, ‘type’: ‘exposure.stat_blob’, ‘uid’: ‘J2042-R126’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘rigid_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R127’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘spline_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R128’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘micrograph_blob_thumb’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R129’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘ctf’, ‘passthrough’: False, ‘type’: ‘exposure.ctf’, ‘uid’: ‘J2042-R130’}, {‘group_name’: ‘manual_rejected_exposures_group_3’, ‘name’: ‘ctf_stats’, ‘passthrough’: False, ‘type’: ‘exposure.ctf_stats’, ‘uid’: ‘J2042-R131’}], ‘description’: ‘’, ‘name’: ‘manual_rejected_exposures_group_3’, ‘num_items’: 0, ‘passthrough’: False, ‘summary’: {}, ‘title’: ‘Manual_Rejected Exposures in Exposure Group 3’, ‘type’: ‘exposure’, ‘uid’: ‘J2042-G11’}, {‘contains’: [{‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘movie_blob’, ‘passthrough’: False, ‘type’: ‘exposure.movie_blob’, ‘uid’: ‘J2042-R132’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘gain_ref_blob’, ‘passthrough’: False, ‘type’: ‘exposure.gain_ref_blob’, ‘uid’: ‘J2042-R133’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘mscope_params’, ‘passthrough’: False, ‘type’: ‘exposure.mscope_params’, ‘uid’: ‘J2042-R134’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘micrograph_blob’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R135’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘micrograph_blob_non_dw’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R136’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘background_blob’, ‘passthrough’: False, ‘type’: ‘exposure.stat_blob’, ‘uid’: ‘J2042-R137’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘rigid_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R138’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘spline_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R139’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘micrograph_blob_thumb’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R140’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘ctf’, ‘passthrough’: False, ‘type’: ‘exposure.ctf’, ‘uid’: ‘J2042-R141’}, {‘group_name’: ‘all_exposures_group_4’, ‘name’: ‘ctf_stats’, ‘passthrough’: False, ‘type’: ‘exposure.ctf_stats’, ‘uid’: ‘J2042-R142’}], ‘description’: ‘’, ‘name’: ‘all_exposures_group_4’, ‘num_items’: 3217, ‘passthrough’: False, ‘summary’: {}, ‘title’: ‘All Exposures in Exposure Group 4’, ‘type’: ‘exposure’, ‘uid’: ‘J2042-G12’}, {‘contains’: [{‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘movie_blob’, ‘passthrough’: False, ‘type’: ‘exposure.movie_blob’, ‘uid’: ‘J2042-R143’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘gain_ref_blob’, ‘passthrough’: False, ‘type’: ‘exposure.gain_ref_blob’, ‘uid’: ‘J2042-R144’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘mscope_params’, ‘passthrough’: False, ‘type’: ‘exposure.mscope_params’, ‘uid’: ‘J2042-R145’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘micrograph_blob’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R146’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘micrograph_blob_non_dw’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R147’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘background_blob’, ‘passthrough’: False, ‘type’: ‘exposure.stat_blob’, ‘uid’: ‘J2042-R148’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘rigid_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R149’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘spline_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R150’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘micrograph_blob_thumb’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R151’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘ctf’, ‘passthrough’: False, ‘type’: ‘exposure.ctf’, ‘uid’: ‘J2042-R152’}, {‘group_name’: ‘accepted_exposures_group_4’, ‘name’: ‘ctf_stats’, ‘passthrough’: False, ‘type’: ‘exposure.ctf_stats’, ‘uid’: ‘J2042-R153’}], ‘description’: ‘’, ‘name’: ‘accepted_exposures_group_4’, ‘num_items’: 3035, ‘passthrough’: False, ‘summary’: {}, ‘title’: ‘Accepted Exposures in Exposure Group 4’, ‘type’: ‘exposure’, ‘uid’: ‘J2042-G13’}, {‘contains’: [{‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘movie_blob’, ‘passthrough’: False, ‘type’: ‘exposure.movie_blob’, ‘uid’: ‘J2042-R154’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘gain_ref_blob’, ‘passthrough’: False, ‘type’: ‘exposure.gain_ref_blob’, ‘uid’: ‘J2042-R155’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘mscope_params’, ‘passthrough’: False, ‘type’: ‘exposure.mscope_params’, ‘uid’: ‘J2042-R156’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘micrograph_blob’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R157’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘micrograph_blob_non_dw’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R158’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘background_blob’, ‘passthrough’: False, ‘type’: ‘exposure.stat_blob’, ‘uid’: ‘J2042-R159’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘rigid_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R160’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘spline_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R161’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘micrograph_blob_thumb’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R162’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘ctf’, ‘passthrough’: False, ‘type’: ‘exposure.ctf’, ‘uid’: ‘J2042-R163’}, {‘group_name’: ‘rejected_exposures_group_4’, ‘name’: ‘ctf_stats’, ‘passthrough’: False, ‘type’: ‘exposure.ctf_stats’, ‘uid’: ‘J2042-R164’}], ‘description’: ‘’, ‘name’: ‘rejected_exposures_group_4’, ‘num_items’: 183, ‘passthrough’: False, ‘summary’: {}, ‘title’: ‘Rejected Exposures in Exposure Group 4’, ‘type’: ‘exposure’, ‘uid’: ‘J2042-G14’}, {‘contains’: [{‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘movie_blob’, ‘passthrough’: False, ‘type’: ‘exposure.movie_blob’, ‘uid’: ‘J2042-R165’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘gain_ref_blob’, ‘passthrough’: False, ‘type’: ‘exposure.gain_ref_blob’, ‘uid’: ‘J2042-R166’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘mscope_params’, ‘passthrough’: False, ‘type’: ‘exposure.mscope_params’, ‘uid’: ‘J2042-R167’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘micrograph_blob’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R168’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘micrograph_blob_non_dw’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R169’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘background_blob’, ‘passthrough’: False, ‘type’: ‘exposure.stat_blob’, ‘uid’: ‘J2042-R170’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘rigid_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R171’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘spline_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2042-R172’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘micrograph_blob_thumb’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2042-R173’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘ctf’, ‘passthrough’: False, ‘type’: ‘exposure.ctf’, ‘uid’: ‘J2042-R174’}, {‘group_name’: ‘manual_rejected_exposures_group_4’, ‘name’: ‘ctf_stats’, ‘passthrough’: False, ‘type’: ‘exposure.ctf_stats’, ‘uid’: ‘J2042-R175’}], ‘description’: ‘’, ‘name’: ‘manual_rejected_exposures_group_4’, ‘num_items’: 0, ‘passthrough’: False, ‘summary’: {}, ‘title’: ‘Manual_Rejected Exposures in Exposure Group 4’, ‘type’: ‘exposure’, ‘uid’: ‘J2042-G15’}], ‘params_spec’: {‘session_uid’: {‘value’: ‘S6’}}, ‘project_uid’: ‘P16’, ‘started_at’: ‘Mon, 15 Dec 2025 00:26:46 GMT’, ‘status’: ‘completed’, ‘uid’: ‘J2042’, ‘version’: ‘v4.7.0’}

cryosparcm cli “get_job(‘$csprojectid’, ‘$pmcid’, ‘job_type’, ‘version’, ‘status’,  ‘params_spec’, ‘errors_run’, ‘input_slot_groups.connections’, ‘cloned_from’, ‘output_result_groups’, ‘started_at’)”

{‘_id’: ‘693f56dbdeb74d07ec33799e’, ‘cloned_from’: None, ‘errors_run’: [{‘message’: “‘NoneType’ object has no attribute ‘add_fields’”, ‘warning’: False}], ‘input_slot_groups’: [{‘connections’: [{‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘slots’: [{‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘movie_blob’, ‘result_type’: ‘exposure.movie_blob’, ‘slot_name’: ‘movie_blob’, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘gain_ref_blob’, ‘result_type’: ‘exposure.gain_ref_blob’, ‘slot_name’: ‘gain_ref_blob’, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘mscope_params’, ‘result_type’: ‘exposure.mscope_params’, ‘slot_name’: ‘mscope_params’, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘micrograph_blob’, ‘result_type’: ‘exposure.micrograph_blob’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘micrograph_blob_non_dw’, ‘result_type’: ‘exposure.micrograph_blob’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘background_blob’, ‘result_type’: ‘exposure.stat_blob’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘rigid_motion’, ‘result_type’: ‘exposure.motion’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘spline_motion’, ‘result_type’: ‘exposure.motion’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘micrograph_blob_thumb’, ‘result_type’: ‘exposure.micrograph_blob’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘ctf’, ‘result_type’: ‘exposure.ctf’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘all_exposures_group_2’, ‘job_uid’: ‘J2042’, ‘result_name’: ‘ctf_stats’, ‘result_type’: ‘exposure.ctf_stats’, ‘slot_name’: None, ‘version’: ‘F’}]}]}, {‘connections’: }], ‘job_type’: ‘patch_motion_correction_multi’, ‘output_result_groups’: [{‘contains’: [{‘group_name’: ‘micrographs’, ‘name’: ‘micrograph_blob_non_dw’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2043-R0’}, {‘group_name’: ‘micrographs’, ‘name’: ‘micrograph_blob_non_dw_AB’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2043-R1’}, {‘group_name’: ‘micrographs’, ‘name’: ‘micrograph_thumbnail_blob_1x’, ‘passthrough’: False, ‘type’: ‘exposure.thumbnail_blob’, ‘uid’: ‘J2043-R2’}, {‘group_name’: ‘micrographs’, ‘name’: ‘micrograph_thumbnail_blob_2x’, ‘passthrough’: False, ‘type’: ‘exposure.thumbnail_blob’, ‘uid’: ‘J2043-R3’}, {‘group_name’: ‘micrographs’, ‘name’: ‘movie_blob’, ‘passthrough’: False, ‘type’: ‘exposure.movie_blob’, ‘uid’: ‘J2043-R4’}, {‘group_name’: ‘micrographs’, ‘name’: ‘micrograph_blob’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2043-R5’}, {‘group_name’: ‘micrographs’, ‘name’: ‘background_blob’, ‘passthrough’: False, ‘type’: ‘exposure.stat_blob’, ‘uid’: ‘J2043-R6’}, {‘group_name’: ‘micrographs’, ‘name’: ‘rigid_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2043-R7’}, {‘group_name’: ‘micrographs’, ‘name’: ‘spline_motion’, ‘passthrough’: False, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2043-R8’}, {‘group_name’: ‘micrographs’, ‘name’: ‘gain_ref_blob’, ‘passthrough’: True, ‘type’: ‘exposure.gain_ref_blob’, ‘uid’: ‘J2043-R9’}, {‘group_name’: ‘micrographs’, ‘name’: ‘mscope_params’, ‘passthrough’: True, ‘type’: ‘exposure.mscope_params’, ‘uid’: ‘J2043-R10’}, {‘group_name’: ‘micrographs’, ‘name’: ‘micrograph_blob_thumb’, ‘passthrough’: True, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2043-R11’}, {‘group_name’: ‘micrographs’, ‘name’: ‘ctf’, ‘passthrough’: True, ‘type’: ‘exposure.ctf’, ‘uid’: ‘J2043-R12’}, {‘group_name’: ‘micrographs’, ‘name’: ‘ctf_stats’, ‘passthrough’: True, ‘type’: ‘exposure.ctf_stats’, ‘uid’: ‘J2043-R13’}], ‘description’: ‘’, ‘name’: ‘micrographs’, ‘num_items’: 0, ‘passthrough’: ‘movies’, ‘summary’: {}, ‘title’: ‘Micrographs’, ‘type’: ‘exposure’, ‘uid’: ‘J2043-G0’}, {‘contains’: [{‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘micrograph_blob’, ‘passthrough’: False, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2043-R14’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘movie_blob’, ‘passthrough’: True, ‘type’: ‘exposure.movie_blob’, ‘uid’: ‘J2043-R15’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘gain_ref_blob’, ‘passthrough’: True, ‘type’: ‘exposure.gain_ref_blob’, ‘uid’: ‘J2043-R16’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘mscope_params’, ‘passthrough’: True, ‘type’: ‘exposure.mscope_params’, ‘uid’: ‘J2043-R17’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘micrograph_blob_non_dw’, ‘passthrough’: True, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2043-R18’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘background_blob’, ‘passthrough’: True, ‘type’: ‘exposure.stat_blob’, ‘uid’: ‘J2043-R19’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘rigid_motion’, ‘passthrough’: True, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2043-R20’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘spline_motion’, ‘passthrough’: True, ‘type’: ‘exposure.motion’, ‘uid’: ‘J2043-R21’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘micrograph_blob_thumb’, ‘passthrough’: True, ‘type’: ‘exposure.micrograph_blob’, ‘uid’: ‘J2043-R22’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘ctf’, ‘passthrough’: True, ‘type’: ‘exposure.ctf’, ‘uid’: ‘J2043-R23’}, {‘group_name’: ‘micrographs_incomplete’, ‘name’: ‘ctf_stats’, ‘passthrough’: True, ‘type’: ‘exposure.ctf_stats’, ‘uid’: ‘J2043-R24’}], ‘description’: ‘’, ‘name’: ‘micrographs_incomplete’, ‘num_items’: 0, ‘passthrough’: ‘movies’, ‘summary’: {}, ‘title’: ‘Micrographs incomplete’, ‘type’: ‘exposure’, ‘uid’: ‘J2043-G1’}], ‘params_spec’: {}, ‘project_uid’: ‘P16’, ‘started_at’: ‘Mon, 15 Dec 2025 00:32:21 GMT’, ‘status’: ‘failed’, ‘uid’: ‘J2043’, ‘version’: ‘v4.7.0’}

cryosparcm eventlog $csprojectid $pmcid | tail -n 40[Mon, 15 Dec 2025 00:32:19 GMT]  License is valid.[Mon, 15 Dec 2025 00:32:19 GMT]  Launching job on lane default target lakota.local …[Mon, 15 Dec 2025 00:32:19 GMT]  Running job on remote worker node hostname lakota.local[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB] Job J2043 Started[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB] Master running v4.7.0, worker running v4.7.0[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB] Working in directory: /shared/sitak/data/jcoleman/cryosparc/projectname/J2043[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB] Running on lane default[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB] Resources allocated:[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB]   Worker:  lakota.local[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB]   CPU   :  [2, 3, 4, 5, 6, 7][Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB]   GPU   :  [1][Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB]   RAM   :  [1, 2][Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB]   SSD   :  False[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB] --------------------------------------------------------------[Mon, 15 Dec 2025 00:32:21 GMT] [CPU RAM used: 91 MB] Importing job module for job type patch_motion_correction_multi…[Mon, 15 Dec 2025 00:32:26 GMT] [CPU RAM used: 250 MB] Job ready to run[Mon, 15 Dec 2025 00:32:26 GMT] [CPU RAM used: 250 MB] ***************************************************************[Mon, 15 Dec 2025 00:32:26 GMT] [CPU RAM used: 250 MB] Transparent hugepages are enabled. You may encounter stalls or performance problems with CryoSPARC jobs.[Mon, 15 Dec 2025 00:32:26 GMT] [CPU RAM used: 250 MB] Traceback (most recent call last):  File “cryosparc_master/cryosparc_compute/run.py”, line 129, in cryosparc_master.cryosparc_compute.run.main  File “cryosparc_master/cryosparc_compute/jobs/motioncorrection/run_patch.py”, line 46, in cryosparc_master.cryosparc_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multiAttributeError: ‘NoneType’ object has no attribute ‘add_fields’
5

@mm98. Thanks for posting the commands’ outputs. We confirmed the problem on our end and will fix it in a future CryoSPARC release.

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