You should not have to install the sympy package directly; I suspect something went wrong during
cryosparcw install-3dflex.
You may want to
- uninstall 3DFlex dependencies
cryosparcw forcedeps - ensure that in the shell where you run
cryosparcw install-3dflexand in the environment where CryoSPARC jobs run:- no cuda executables or libraries are present, check:
$LD_LIBRARY_PATH$PATH- output of
/sbin/ldconfig -p
- no cuda executables or libraries are present, check:
- retry installation of 3DFlex dependencies, recording output
cryosparcw install-3dflex 2>&1 | tee install_3dflex.log - inspect recorded output for installation errors
- retry the pytorch test