Installing "3dflex" got failed

You should not have to install the sympy package directly; I suspect something went wrong during
cryosparcw install-3dflex.
You may want to

  1. uninstall 3DFlex dependencies
    cryosparcw forcedeps
  2. ensure that in the shell where you run
    cryosparcw install-3dflex and in the environment where CryoSPARC jobs run:
    • no cuda executables or libraries are present, check:
      • $LD_LIBRARY_PATH
      • $PATH
      • output of /sbin/ldconfig -p
  3. retry installation of 3DFlex dependencies, recording output
    cryosparcw install-3dflex 2>&1 | tee install_3dflex.log
  4. inspect recorded output for installation errors
  5. retry the pytorch test