Hi @spunjani
Just for final confirmation about the hardwares as well as other stuff.
I have,
macOS Mojave 10.14.6
**iMac (21.5-inch, Late 2013) **
Processor 2.9 GHz Intel Core i5
Graphics NVIDIA GeForce GT 750M 1 GB
Memory 16 GB 1600 MHz DDR3
4 physical and logical cpu
default shell is bash
Also if it helps you here is the full information that I got during the installation. Thank you for your help. Just need to know whether or not cryosparc works in my machine.
Installation Settings:
License ID : *******
Root Directory : /Users/sureshbanjara/cryosparc_user/software/cryosparc/cryosparc_master/cryosparc2_master
Master Hostname : C02M********
Database Directory : /Users/sureshbanjara/cryosparc_user/software/cryosparc/cryosparc_master/cryosparc2_database
Base HTTP Port Number : 39000
Developer Install : false
Operating System : Darwin
Insecure Install : false
Standalone Install : true
Worker Root Directory : /Users/sureshbanjara/cryosparc_user/software/cryosparc/cryosparc_master/cryosparc2_worker
Initial User Email : s.banjarasuresh@latrobe.edu.au
Initial User Password : ******
Initial User Name : Suresh Banjara
CUDA Path : /usr/local/cuda
SSD : true
SSD Path : /scratch/cryosparc_cache
Version : v2.15.0
The cryoSPARC System master installation will host a database,
web application, and command layer for cryoSPARC, but will not
perform processing jobs.
Please read and confirm the above settings. The cryoSPARC database
will be stored at the database directory which is relative to the
root directory, unless provided as an absolute path.
You can change the database directory now by passing the --dbapth
parameter to this installer, or later via the command line.
Are the above settings correct?
- Yes
- No
#? 1
Continuing.
Setting up hard-coded config.sh environment variables
Installing all dependencies.
Checking dependencies…
Dependencies for python have changed - reinstalling…
Installing anaconda python…
PREFIX=/Users/sureshbanjara/cryosparc_user/software/cryosparc/cryosparc_master/cryosparc2_master/deps/anaconda
installing: python-2.7.16-h9bab390_0 …
/Users/sureshbanjara/cryosparc_user/software/cryosparc/cryosparc_master/cryosparc2_master/deps_bundle/python/anaconda.sh: line 370: /Users/sureshbanjara/cryosparc_user/software/cryosparc/cryosparc_master/cryosparc2_master/deps/anaconda/pkgs/python-2.7.16-h9bab390_0/bin/python: cannot execute binary file
Done.
anaconda python installation successful.
Preparing to install all conda packages…
WARNING: The conda.compat module is deprecated and will be removed in a future release.
Downloading and Extracting Packages
######################################################################## | 100%
CaseInsensitiveFileSystemError: Cannot extract package to a case-insensitive file system.
package location: /anaconda3/pkgs/ncurses-6.1-he6710b0_1.tar.bz2
extract location: /anaconda3/pkgs/ncurses-6.1-he6710b0_1
CaseInsensitiveFileSystemError: Cannot extract package to a case-insensitive file system.
package location: /anaconda3/pkgs/openssl-1.0.2p-h14c3975_0.tar.bz2
extract location: /anaconda3/pkgs/openssl-1.0.2p-h14c3975_0
Done.
conda packages installation successful.
Preparing to install all pip packages…
Processing ./deps_bundle/python/python_packages/pip_packages/Flask-JSONRPC-0.3.1.tar.gz
Processing ./deps_bundle/python/python_packages/pip_packages/Flask-PyMongo-0.5.1.tar.gz
Processing ./deps_bundle/python/python_packages/pip_packages/libtiff-0.4.2.tar.gz
Requirement already satisfied: Flask>=0.10 in /anaconda3/lib/python3.7/site-packages (from Flask-JSONRPC==0.3.1) (1.0.2)
Requirement already satisfied: PyMongo>=2.5 in /anaconda3/lib/python3.7/site-packages (from Flask-PyMongo==0.5.1) (3.10.1)
Requirement already satisfied: Werkzeug>=0.14 in /anaconda3/lib/python3.7/site-packages (from Flask>=0.10->Flask-JSONRPC==0.3.1) (0.14.1)
Requirement already satisfied: click>=5.1 in /anaconda3/lib/python3.7/site-packages (from Flask>=0.10->Flask-JSONRPC==0.3.1) (7.0)
Requirement already satisfied: itsdangerous>=0.24 in /anaconda3/lib/python3.7/site-packages (from Flask>=0.10->Flask-JSONRPC==0.3.1) (1.1.0)
Requirement already satisfied: Jinja2>=2.10 in /anaconda3/lib/python3.7/site-packages (from Flask>=0.10->Flask-JSONRPC==0.3.1) (2.10)
Requirement already satisfied: MarkupSafe>=0.23 in /anaconda3/lib/python3.7/site-packages (from Jinja2>=2.10->Flask>=0.10->Flask-JSONRPC==0.3.1) (1.1.1)
Skipping bdist_wheel for Flask-JSONRPC, due to binaries being disabled for it.
Skipping bdist_wheel for Flask-PyMongo, due to binaries being disabled for it.
Skipping bdist_wheel for libtiff, due to binaries being disabled for it.
Installing collected packages: Flask-JSONRPC, Flask-PyMongo, libtiff
Found existing installation: Flask-JSONRPC 0.3.1
Uninstalling Flask-JSONRPC-0.3.1:
Successfully uninstalled Flask-JSONRPC-0.3.1
Running setup.py install for Flask-JSONRPC … done
Found existing installation: Flask-PyMongo 0.5.1
Uninstalling Flask-PyMongo-0.5.1:
Successfully uninstalled Flask-PyMongo-0.5.1
Running setup.py install for Flask-PyMongo … done
Found existing installation: libtiff 0.4.2
Uninstalling libtiff-0.4.2:
Successfully uninstalled libtiff-0.4.2
Running setup.py install for libtiff … done
Successfully installed Flask-JSONRPC-0.3.1 Flask-PyMongo-0.5.1 libtiff-0.4.2
Done.
pip packages installation successful.
Main dependency installation completed. Continuing…
Completed.
Currently checking hash for mongodb
Dependencies for mongodb have changed - reinstalling…
mongodb 3.4.10 installation successful.
Completed.
Completed dependency check.
************ CRYOSPARC MASTER INSTALLATION COMPLETE **************
CryoSPARC System master has now been installed.
Add bin directory to your ~/.bash_profile ?
- Yes
- No
#? 1
The following lines were appended to your ~/.bash_profile:
export PATH=/Users/sureshbanjara/cryosparc_user/software/cryosparc/cryosparc_master/cryosparc2_master/bin:$PATH
************ CRYOSPARC SYSTEM: STANDALONE INSTALLER **************
The installer will now download, install and connect the worker
package on this machine. The worker package will allow cryoSPARC
to run compute jobs.
Starting cryoSPARC…
stat: illegal option – -
usage: stat [-FlLnqrsx] [-f format] [-t timefmt] [file …]
(base) C02M603SF8J8:cryosparc2_master sureshbanjara$