I got an error during inspect picks
[CPU: 196.3 MB] Traceback (most recent call last): File "cryosparc2_master/cryosparc2_compute/run.py", line 85, in cryosparc2_compute.run.main File "cryosparc2_compute/jobs/manual_picker/run_inspect_simple.py", line 353, in run_inspect_simple ax.hist2d(xvals, yvals, bins=50, range=[[xmin,xmax],[ymin,ymax]]) File "/home/mohammad/cryosparc2c/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/matplotlib/__init__.py", line 1812, in inner return func(ax, *args, **kwargs) File "/home/mohammad/cryosparc2c/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/matplotlib/axes/_axes.py", line 6327, in hist2d normed=normed, weights=weights) File "/home/mohammad/cryosparc2c/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/numpy/lib/twodim_base.py", line 714, in histogram2d hist, edges = histogramdd([x, y], bins, range, normed, weights) File "/home/mohammad/cryosparc2c/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/numpy/lib/function_base.py", line 749, in histogramdd 'range parameter must be finite.') ValueError: range parameter must be finite.
I got that error after: import micrographs -> CTF estimation -> exposure curation -> blob picking -> inspect particle picks.
My work around was to do extract from micrographs after blob picking.
I could do the following, and didn’t get an error on inspect picks.
… -> blob picking -> extract from micrographs -> 2D classification -> select templates -> template picking -> inspect picks
Suggestions for trouble shooting and what might be going on. Something in blob picks.