I’m installing Cryosparc 4.4.1 in a SGE cluster. Our configuration of SGE hands out a variable called TMPDIR
with name of a path on a local SSD on each compute node. TMPDIR
changes for each job.
I followed the instructions for dynamic SSD paths and added this to config.sh
:
export CRYOSPARC_SSD_PATH="$TMPDIR"
How can I confirm that the SSD cache is actually being used? I see this in job.log when doing 2D classification:
Transferring across 2 threads: (0/20)
Transferring across 2 threads: 001865614607949450149_14sep05c_c_00003gr_00014sq_00006hl_00002es.frames_patch_aligned_doseweighted_particles.mrc (1/20)
Transferring across 2 threads: 000691201326874248749_14sep05c_c_00003gr_00014sq_00005hl_00005es.frames_patch_aligned_doseweighted_particles.mrc (2/20)
<snip>
I’m 95% certain the above lines mean the SSD is being used, but I’d love official confirmation.