How do I reconstruct my whole protein after local refinement

[wtempel]

@olibclarke

For map combination, aligning maps to a global reconstruction and combining by taking the maximum value at each voxel (vop maximum in UCSF Chimera) is the best method I have found to get a seamless combination. I would still encourage deposition of the orginal component maps as well, though.

Would this suggestion from a related forum topic work for you?