I am running cryosparc v2.4.0 trying to perform homogeneous refinements.
After 4-5 iterations jobs keep crashing with the following similar error messages.
The messages differ in the IOError values between runs.
We did some python updates recently, but these were of the system python.
Are there any system dependencies that we should make sure to have?
Traceback (most recent call last):
File “cryosparc2_worker/cryosparc2_compute/run.py”, line 78, in cryosparc2_compute.run.main
File “cryosparc2_worker/cryosparc2_compute/jobs/refine/run.py”, line 507, in cryosparc2_compute.jobs.refine.run.run_homo_refine
File “cryosparc2_compute/dataset.py”, line 363, in to_file
n.save(file, outdata, allow_pickle=False)
File “/data/cryosparc2/cryosparc2_master/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/numpy/lib/npyio.py”, line 491, in save
File “/data/cryosparc2/cryosparc2_master/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/numpy/lib/format.py”, line 584, in write_array
IOError: 37249 requested and 13 written