GPU-accelerated extraction crashes when binning [Bug]

olibclarke · December 27, 2018, 9:12pm

GPU-accelerated extraction of particles fails with the attached error if I attempt to Fourier-crop the particles. It does not fail if I extract them unbinned, or if I use the CPU version.

Cheers
Oli

DanielAsarnow · January 1, 2019, 9:11pm

This is fixed in the current version.

olibclarke · January 1, 2019, 9:25pm

Not for me - still happens in 2.4.6

DanielAsarnow · January 1, 2019, 9:41pm

That’s weird. I had that bug previously, but I updated yesterday and just ran a job a few minutes ago, using 2 GPUs and binning from 300 to 100 px.

stephan · January 2, 2019, 10:57pm

Hi Everyone,

The fix for this bug will be released in the next version of cryoSPARC. There seems to be a few cases where this job will work (CPU only, specific bin values & mic resolution combos).

stephan · January 11, 2019, 5:14pm

Hi @olibclarke, @DanielAsarnow,

The fix for this has been released in v2.5.

Thanks!

olibclarke · January 11, 2019, 5:15pm

Yep, tried and it works now - thanks @stephan!

Cheers
Oli