Gain reference problems

Troubleshooting
1

Hello,

Trying to import movies from the tutorial test set I am getting the following error:

Traceback (most recent call last):
File “cryosparc2_master/cryosparc2_compute/run.py”, line 78, in cryosparc2_compute.run.main
File “cryosparc2_compute/jobs/imports/run.py”, line 510, in run_import_movies_or_micrographs
with open(gainref_abs_path) as mrc_file:
IOError: [Errno 2] No such file or directory: u’$HOME/test_set/empiar_10025_subset/norm-amibox05-0.mrc’

If I leave the gain reference blank I can import the movies without correction so $HOME seems to be defined correctly and if I type “ls $HOME/test_set/empiar_10025_subset/norm-amibox05-0.mrc” from a terminal I can find the file.

Any ideas?

1 Like
2

exactly same problem here, and I have no idea why. I have change the name and the location of the file and always the same problem

3

I had the same problem and it appears $HOME does not get resolved for the gain reference file. If you replace $HOME with the actual path it stands for in the file browser, cryoSPARC can access and read the file.

4

Problem solved by writing the complete path.
Thanks!

5

Bug still there in version 2.9 and solved as above. Thanks