Hello,
I got a skcuda error when I tried to re-extract particles without bin. How to solve this issue? I am runnning V4.1.1 + 230110 patch. OS: Ubuntu.
Here is the log message:
[CPU: 1.71 GB]
– 0.0: (1 of 22252) processing J1/imported/005397166133235447794_22nov23a_HB1123a_00001gr_00126sq940_v02_00002hl_00002enn-a-DW.mrc
93 particles extracted (2 rejected near edges)
[CPU: 1.71 GB]
– 0.1: (2 of 22252) processing J1/imported/008649957341257116134_22nov23a_HB1123a_00001gr_00126sq940_v02_00002hl_00004enn-a-DW.mrc
92 particles extracted (1 rejected near edges)
[CPU: 2.34 GB]
– 0.0: (3 of 22252) processing J1/imported/003330116412613873338_22nov23a_HB1123a_00001gr_00126sq940_v02_00002hl_00005enn-a-DW.mrc
100 particles extracted (1 rejected near edges)
[CPU: 1.67 GB]
Error occurred while processing micrograph J1/imported/005397166133235447794_22nov23a_HB1123a_00001gr_00126sq940_v02_00002hl_00002enn-a-DW.mrc
Traceback (most recent call last):
File “/spshared/apps/cryosparc4/cryosparc_worker/cryosparc_compute/jobs/pipeline.py”, line 60, in exec
return self.process(item)
File “/spshared/apps/cryosparc4/cryosparc_worker/cryosparc_compute/jobs/extract/run.py”, line 498, in process
result = extraction_gpu.do_extract_particles_single_mic_gpu(mic=mic, bg_bin=bg_bin,
File “/spshared/apps/cryosparc4/cryosparc_worker/cryosparc_compute/jobs/extract/extraction_gpu.py”, line 140, in do_extract_particles_single_mic_gpu
ifft_plan = skcuda_fft.Plan(shape = (bin_size, bin_size),
File “/spshared/apps/cryosparc4/cryosparc_worker/cryosparc_compute/skcuda_internal/fft.py”, line 132, in init
self.worksize = cufft.cufftMakePlanMany(
File “/spshared/apps/cryosparc4/cryosparc_worker/cryosparc_compute/skcuda_internal/cufft.py”, line 749, in cufftMakePlanMany
cufftCheckStatus(status)
File “/spshared/apps/cryosparc4/cryosparc_worker/cryosparc_compute/skcuda_internal/cufft.py”, line 124, in cufftCheckStatus
raise e
cryosparc_compute.skcuda_internal.cufft.cufftInvalidValue
Marking J1/imported/005397166133235447794_22nov23a_HB1123a_00001gr_00126sq940_v02_00002hl_00002enn-a-DW.mrc as incomplete and continuing…