when I choose to install the v2.5.0 version cryosparc on my workstation, it turns out to show the following error.
Command “python setup.py egg_info” failed with error code 1 in /tmp/pip-XJeETv-b uild/
Can anybody help solve this? Thank you.
The cryoSPARC System master installation will host a database,
web application, and command layer for cryoSPARC, but will not
perform processing jobs.
Please read and confirm the above settings. The cryoSPARC database
will be stored at the database directory which is relative to the
root directory, unless provided as an absolute path.
You can change the database directory now by passing the --dbapth
parameter to this installer, or later via the command line.
Are the above settings correct?
- Yes
- No
#? 1
Continuing.
Setting up hard-coded config.sh environment variables
Installing all dependencies.
Checking dependencies…
Dependencies for python have changed - reinstalling…
Installing anaconda python…
PREFIX=/home1/hxn/software/cryosparc/cryosparc2_master/deps/anaconda
installing: python-2.7.14-h1571d57_29 …
Python 2.7.14 :: Anaconda, Inc.
installing: ca-certificates-2017.08.26-h1d4fec5_0 …
installing: conda-env-2.6.0-h36134e3_1 …
installing: libgcc-ng-7.2.0-h7cc24e2_2 …
installing: libstdcxx-ng-7.2.0-h7a57d05_2 …
installing: libffi-3.2.1-hd88cf55_4 …
installing: ncurses-6.0-h9df7e31_2 …
installing: openssl-1.0.2n-hb7f436b_0 …
installing: tk-8.6.7-hc745277_3 …
installing: yaml-0.1.7-had09818_2 …
installing: zlib-1.2.11-ha838bed_2 …
installing: libedit-3.1-heed3624_0 …
installing: readline-7.0-ha6073c6_4 …
installing: sqlite-3.20.1-hb898158_2 …
installing: asn1crypto-0.23.0-py27h7b0c810_0 …
installing: certifi-2017.11.5-py27h71e7faf_0 …
installing: chardet-3.0.4-py27hfa10054_1 …
installing: enum34-1.1.6-py27h99a27e9_1 …
installing: idna-2.6-py27h5722d68_1 …
installing: ipaddress-1.0.18-py27h337fd85_0 …
installing: pycosat-0.6.3-py27ha4109ae_0 …
installing: pycparser-2.18-py27hefa08c5_1 …
installing: pysocks-1.6.7-py27he2db6d2_1 …
installing: ruamel_yaml-0.11.14-py27h672d447_2 …
installing: six-1.11.0-py27h5f960f1_1 …
installing: cffi-1.11.2-py27ha7929c6_0 …
installing: setuptools-36.5.0-py27h68b189e_0 …
installing: cryptography-2.1.4-py27h6697b16_0 …
installing: wheel-0.30.0-py27h2bc6bb2_1 …
installing: pip-9.0.1-py27ha730c48_4 …
installing: pyopenssl-17.5.0-py27hcee3be0_0 …
installing: urllib3-1.22-py27ha55213b_0 …
installing: requests-2.18.4-py27hc5b0589_1 …
installing: conda-4.3.31-py27_0 …
installation finished.
Done.
anaconda python installation successful.
Preparing to install all conda packages…
Done.
conda packages installation successful.
Preparing to install all pip packages…
Processing ./deps_bundle/python/python_packages/pip_packages/Flask-JSONRPC-0.3.1 .tar.gz
Processing ./deps_bundle/python/python_packages/pip_packages/Flask-PyMongo-0.5.1 .tar.gz
Processing ./deps_bundle/python/python_packages/pip_packages/libtiff-0.4.2.tar.g z
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File “”, line 1, in
File “/tmp/pip-XJeETv-build/setup.py”, line 77, in
from numpy.distutils.core import setup, Extension
ImportError: No module named numpy.distutils.core
----------------------------------------
Command “python setup.py egg_info” failed with error code 1 in /tmp/pip-XJeETv-b uild/
Done.
pip packages installation successful.
Main dependency installation completed. Continuing…
Completed.
Currently checking hash for mongodb
Dependencies for mongodb have changed - reinstalling…
mongodb 3.4.10 installation successful.
Completed.
Completed dependency check.
************ CRYOSPARC MASTER INSTALLATION COMPLETE **************
CryoSPARC System master has now been installed.
Add bin directory to your ~/.bashrc ?
- Yes
- No
#? 1
The following lines were appended to your ~/.bashrc:
export PATH=/home1/hxn/software/cryosparc/cryosparc2_master/bin:$PATH
************ CRYOSPARC SYSTEM: STANDALONE INSTALLER **************
The installer will now download, install and connect the worker
package on this machine. The worker package will allow cryoSPARC
to run compute jobs.
Starting cryoSPARC…
Starting cryoSPARC System master process…
/home1/hxn/software/cryosparc/cryosparc2_master/bin/cryosparcm: line 380: superv isorctl: command not found