Since we have updated to cryoSPARC 2.9.0 we get the following error when executing job “Select 2D classes”
Traceback (most recent call last):
File “cryosparc2_master/cryosparc2_compute/run.py”, line 78, in cryosparc2_compute.run.main (/home/installtest/deps_manage/cryosparc2_package/deploy/stage/cryosparc2_master/cryosparc2_compute/run.c:3954)
File “cryosparc2_compute/jobs/select2D/run.py”, line 156, in run
Any help is appreciated.
Is it possible if you can run the following commands on the command line?
cryosparcm cli "refresh_job_types()"
I just tried and it did not help. Also, I got the following spawn errors when I executed the ‘cryosparcm restart’ command:
CryoSPARC is running.
Starting cryoSPARC System master process…
CryoSPARC is not already running.
database: ERROR (spawn error)
command_core: ERROR (spawn error)
cryosparc command core startup complete.
command_proxy: ERROR (spawn error)
CryoSPARC master started.
From this machine, access cryoSPARC at
From other machines on the network, access cryoSPARC at
Startup can take several minutes. Point your browser to the address
and refresh until you see the cryoSPARC web interface.
Your update may have went wrong. First, try seeing if you can successfully restart cryoSPARC. Follow my earlier post for details on how to ensure zombie processes are not a possibility: Mongo connection refused
Then, try starting cryoSPARC again
If that still doesn’t work, force-update your instance:
I just restarted the computer and everything is working again.
Thanks for your help with this.