Delete Rejected Images

[hansenbry]

Hi,

Is there a way to delete images marked as ‘Rejected’ in cryoSPARC Live or at least export a list of the image paths so a script can be written to delete that “bad” data?

Bryan

[olibclarke]

Yes - see here - a little bit of a PITA but works:

Get only good micrographs/movies after Live? (feature request?)

I found an easier way to do this - export a result group (from a completed Live Exposure Export Job, in the “outputs” tab), e.g. accepted exposures (button on left): This then creates a new exported folder that has links to the accepted motion corrected mics in a sub directory, e.g. /P5/exports/groups/P5_J291_accepted_exposures/S15/motioncorrected I can then make a text file with a list of these and use them to filter the micrographs/movies either during or after transfer. A little convoluted…

[hansenbry]

Thanks @olibclarke. I’ll use this to add to our workflows.

[hansenbry]

@olibclarke in the new V3.2 UI for cryoSPARC Live where is the export options? I don’t see them anymore and I’m guessing it’s a section on the left nav I’m missing somewhere.

[olibclarke]

I actually run it from the matching workspace in “normal” cryoSPARC - there is a job type called “Cryosparc Live Exposure Export”, and then proceed as per the linked post

[sdawood]

Hi @hansenbry,

The export buttons are available in the new UI within the ‘Details’ tab:

We also have a comprehensive overview of the new Live interface on the cryoSPARC Guide: https://guide.cryosparc.com/live/ui-overview

- Suhail