Hi
I updated cryosparc from V2.5 to V2.8 in ubuntu. It installed successfully without error messages.
but when I started cryosparc. there is error about the database can not be started.
CryoSPARC is running.
Stopping cryosparc.
command_proxy: stopped
command_vis: stopped
webapp: stopped
command_core: stopped
database: stopped
Shut down
Starting cryoSPARC System master process…
CryoSPARC is not already running.
database: ERROR (spawn error)
Traceback (most recent call last):
File “”, line 1, in
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py”, line 1149, in database_names
“listDatabases”)[“databases”]]
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/database.py”, line 491, in command
with client._socket_for_reads(read_preference) as (sock_info, slave_ok):
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/contextlib.py”, line 17, in enter
return self.gen.next()
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py”, line 859, in _socket_for_reads
with self._get_socket(read_preference) as sock_info:
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/contextlib.py”, line 17, in enter
return self.gen.next()
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py”, line 823, in _get_socket
server = self._get_topology().select_server(selector)
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/topology.py”, line 214, in select_server
address))
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/topology.py”, line 189, in select_servers
self._error_message(selector))
pymongo.errors.ServerSelectionTimeoutError: localhost:39001: [Errno 111] Connection refused
run with cryosparcm log command_core command
*** BG WORKER START
======== Creating User: marcel@gmail.com marcel
Traceback (most recent call last):
File “cryosparc2_command/command_core/init.py”, line 180, in background_worker
check_heartbeats()
File “cryosparc2_command/command_core/init.py”, line 1373, in check_heartbeats
‘heartbeat_at’ : {’$lt’ : deadline} }, {‘project_uid’ : 1, ‘uid’ : 1}))
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/cursor.py”, line 1114, in next
if len(self.__data) or self._refresh():
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/cursor.py”, line 1036, in _refresh
self.__collation))
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/cursor.py”, line 873, in __send_message
**kwargs)
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py”, line 905, in _send_message_with_response
exhaust)
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/mongo_client.py”, line 916, in _reset_on_error
return func(*args, **kwargs)
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/server.py”, line 136, in send_message_with_response
response_data = sock_info.receive_message(1, request_id)
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/pool.py”, line 452, in receive_message
self._raise_connection_failure(error)
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/pool.py”, line 550, in _raise_connection_failure
_raise_connection_failure(self.address, error)
File “/home/hellion/cryosparcv2/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/pymongo/pool.py”, line 211, in _raise_connection_failure
raise AutoReconnect(msg)
AutoReconnect: ubuntu-hellion:39001: [Errno 104] Connection reset by peer
****** Heartbeat check failed ****
Has anyone any suggestion, please?
Best,
Lifei