I updated to 2.11 once it was released and it was working fine. However, some of the projects dont seem to be properly migrated to the new system and are thus not useable anymore.
I checked the project folder and realized that for the projects were the migration failed, dont have the json files in the folder. Is there a possibility to try to migrate these projects again or to create the respective json files?
I get with any job in this project even copied jobs that ran already fine:
Traceback (most recent call last):
File “cryosparc2_worker/cryosparc2_compute/run.py”, line 78, in cryosparc2_compute.run.main
File “cryosparc2_worker/cryosparc2_compute/jobs/refine/run.py”, line 49, in cryosparc2_compute.jobs.refine.run.run_homo_refine
AttributeError: ‘NoneType’ object has no attribute ‘get_items’
Can you try reinstalling cryoSPARC? First, stop cryoSPARC: cryosparcm stop
Then, ensure there are no running cryoSPARC processes:
ps -ax | grep “supervisord” (kill only the process that is running from your cryosparc2 install)
ps -ax | grep “cryosparc2_command” (kill all the matching processes related to your cryosparc2 instance)
ps -ax | grep “mongod” (kill only the process running your cryosparc2 database)
e.g. kill 82681