after upgrading to version 3.0.1 I get the following error message when I use ‘Topaz Train’ (I have run ‘Topaz Train’ successfully using an older version of cryoSPARC with the same path to the Topaz executable).
AssertionError: Cannot determine topaz version, command “/programs/x86_64-linux/system/sbgrid_bin/topaz --version” did not produce valid output: “0.2.5a”
When I run the command ‘/programs/x86_64-linux/system/sbgrid_bin/topaz --version’ in the terminal I get: “TOPAZ 0.2.5a”
The error is from Cryosparc doing a Topaz version check because Cryosparc has not added Topaz v0.2.5a as a valid Topaz version. Hopefully the Cryosparc team will add it. In the meantime, downgrade your Topaz to v0.2.4 to use it in Cryosparc.