@wtempel following up the processing issues. After importing particles in J86, I used them to do homogenous refinement in J89. After which I wanted to re-extract particles but the jobs failed with the error:
Traceback (most recent call last):
File "cryosparc_master/cryosparc_compute/run.py", line 116, in cryosparc_master.cryosparc_compute.run.main
File "/home/klin_csparc/Cryosparc3/cryosparc_worker/cryosparc_compute/jobs/extract/run.py", line 325, in run_extract_micrographs_multi
run_extract_micrographs(job)
File "/home/klin_csparc/Cryosparc3/cryosparc_worker/cryosparc_compute/jobs/extract/run.py", line 670, in run_extract_micrographs
particles_dset = rc.load_input_group(input_group_name='particles')
File "/home/klin_csparc/Cryosparc3/cryosparc_worker/cryosparc_compute/jobs/runcommon.py", line 698, in load_input_group
assert is_connected[idx], "Slot %s.%s must be connected in connection %d!" % (input_group_name, slot['name'], idx)
AssertionError: Slot particles.location must be connected in connection 0!
For the looks of it the J89 refinement striped the location data.
Fileds in: J86/imported_particles.cs
('uid',
'blob/path',
'blob/idx',
'blob/shape',
'blob/psize_A',
'blob/sign',
'blob/import_sig',
'ctf/type',
'ctf/exp_group_id',
'ctf/accel_kv',
'ctf/cs_mm',
'ctf/amp_contrast',
'ctf/df1_A',
'ctf/df2_A',
'ctf/df_angle_rad',
'ctf/phase_shift_rad',
'ctf/scale',
'ctf/scale_const',
'ctf/shift_A',
'ctf/tilt_A',
'ctf/trefoil_A',
'ctf/tetra_A',
'ctf/anisomag',
'ctf/bfactor',
'location/micrograph_uid',
'location/exp_group_id',
'location/micrograph_path',
'location/micrograph_shape',
'location/micrograph_psize_A',
'location/center_x_frac',
'location/center_y_frac',
'alignments3D/split',
'alignments3D/shift',
'alignments3D/pose',
'alignments3D/psize_A',
'alignments3D/error',
'alignments3D/error_min',
'alignments3D/resid_pow',
'alignments3D/slice_pow',
'alignments3D/image_pow',
'alignments3D/cross_cor',
'alignments3D/alpha',
'alignments3D/alpha_min',
'alignments3D/weight',
'alignments3D/pose_ess',
'alignments3D/shift_ess',
'alignments3D/class_posterior',
'alignments3D/class',
'alignments3D/class_ess')
Fileds in: J89/J89_passthrough_particles.cs
('uid',
'blob/path',
'blob/idx',
'blob/shape',
'blob/psize_A',
'blob/sign',
'blob/import_sig')