sanling@New01:/data2/shenglong/cagq/P9$ cryosparcm status
----------------------------------------------------------------------------
CryoSPARC System master node installed at
/home/sanling/Downloads/soft/software/cryosparc/cryosparc2_master
Current cryoSPARC version: v2.15.0
----------------------------------------------------------------------------
cryosparcm process status:
app STOPPED Not started
app_dev STOPPED Not started
command_core RUNNING pid 17170, uptime 0:21:40
command_proxy RUNNING pid 17208, uptime 0:21:36
command_rtp RUNNING pid 17210, uptime 0:21:35
command_vis RUNNING pid 17302, uptime 0:21:22
database RUNNING pid 17094, uptime 0:21:43
watchdog_dev STOPPED Not started
webapp RUNNING pid 17303, uptime 0:21:22
webapp_dev STOPPED Not started
----------------------------------------------------------------------------
global config variables:
export CRYOSPARC_LICENSE_ID="XXXXXXXXXXXXXXXX"
export CRYOSPARC_MASTER_HOSTNAME="New01"
export CRYOSPARC_DB_PATH="/home/sanling/Downloads/soft/software/cryosparc/cryosparc2_database"
export CRYOSPARC_BASE_PORT=39000
export CRYOSPARC_DEVELOP=false
export CRYOSPARC_INSECURE=false
export CRYOSPARC_CLICK_WRAP=true
sanling@New01:/data2/shenglong/cagq/P9$ cat /home/sanling/Downloads/soft/software/cryosparc/cryosparc2_worker/config.sh
export CRYOSPARC_LICENSE_ID="XXXXXXXXXXXXXXXX"
export CRYOSPARC_USE_GPU=true
export CRYOSPARC_CUDA_PATH="/usr/local/cuda-10.1"
export CRYOSPARC_DEVELOP=false
sanling@New01:/data2/shenglong/cagq/P9$ cryosparcm update
CryoSPARC current version v2.15.0
update starting on 2022年 01月 24日 星期一 15:25:37 CST
No version specified - updating to latest version.
sanling@New01:/data2/shenglong/cagq/P9$ cryosparcm update --check
CryoSPARC current version v2.15.0
update starting on 2022年 01月 24日 星期一 15:26:34 CST
sanling@New01:/data2/shenglong/cagq/P9$
@slling Can you try a fresh install of cryoSPARC?
- in a different directory than your version 2.15 installation
- configured to use the existing cryoSPARC dtabases
Before installation, the v2.15 cryoSPARC installation must be permanently retired. Running two cryoSPARC instances without special precautions is not supported.
- With v 2.15 still running
- preserve a copy of
/home/sanling/Downloads/soft/software/cryosparc/cryosparc2_master/config.sh
- note the path to your existing database (
/home/sanling/Downloads/soft/software/cryosparc/cryosparc2_database
, based on your earlier post) - as a precaution, backup the database
cryosparcm stop
- permanently remove
/home/sanling/Downloads/soft/software/cryosparc/cryosparc2_master/bin
from yourPATH
(also set in~/.bashrc
?) and disable other references (such as aliases) to/home/sanling/Downloads/soft/software/cryosparc/cryosparc2_master/bin/cryosparcm
- preserve a copy of
-
Install cryoSPARC in a location outside
/home/sanling/Downloads/soft/software/cryosparc
so as not to interfere with the old cryoSPARC installation- start in a “clean” shell that “knows nothing” about your old instance
- during installation of the master package, point
--dbpath
to your existing database. In the future, don’t inadvertently delete the database as it appears to reside inside/next to your old cryoSPARC installation. - complete master and worker installation according to your intended instance type
- Reconfigure your system (
PATH
,alias
,~/.bashrc
, etc. as applicable) so thatcryosparcm
points to the new cryoSPARC instance