After I clear intermediate result of all job, I can’t extract particles. It report an error as the follwing:
[CPU: 252.9 MB] Traceback (most recent call last):
File “cryosparc_worker/cryosparc_compute/run.py”, line 84, in cryosparc_compute.run.main
File “/opt/cryosparc2/cryosparc_worker/cryosparc_compute/jobs/extract/run.py”, line 97, in run_extract_micrographs_multi
AttributeError: ‘NoneType’ object has no attribute ‘add_fields’
Is the intermediate result essential for next job? Doesn’t the final result file include all parameters for next job?
Is it possible if you can post your workflow? Which job did you get the particles from?
As a note, the “Clear Intermediate Results” job only clears the intermediate results of iterative jobs (2D Classification, Refinement, etc., ). It won’t affect jobs that create micrographs or particle picking jobs.
I have been running into the same issue. I get the problem for any job that was present when i cleared intermediate results. This is includes extraction from any 3D jobs (ab initio, homo-, hetero-, non-uniform, and local refinements). If I clear the job in which I am linking the particles from and rerun the job with all intermediate jobs present, the re-extraction of particles does not work also.
EDIT: After messing around and trying to track down the issue, it appears that using the micrograph output from a curated micrographs job that has the intermediate files cleared, seemed to be my issue. Using the micrograph output from patch ctf fixed the issue.