Hey,
Has anyone tried to run a 3DFlex job with defined segments file from chimera, only to get the following error?
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/run.py”, line 96, in cryosparc_compute.run.main
File “cryosparc_master/cryosparc_compute/jobs/flex_refine/run_meshprep.py”, line 140, in cryosparc_compute.jobs.flex_refine.run_meshprep.run
ValueError: invalid literal for int() with base 10: ‘’
Just FYI tested/made sure of the following:
- Created a segmentation from the consensus volume,
- Made sure the mask covers all the segments (as sometimes you get a random spec that falls right outside the mask),
- Made sure the connections exist between selected segments when fusing sub-meshes to make the final mesh, however,
- I couldn’t find a proper definition of whether all the segments (and segment connections) should be defined, or whether only the segments that belong to, lets say, “Main body” of interest.
- "The connections must form a ‘tree’ structure and cannot have cycles. " Again, personally, this is something unclear, and I could not find proper documentation regarding this.
Thanks