Have a SLURM cluster install of cryoSPARC on a CentOS 7 and running through the t20s tutorial.
Everything seems to work fine until I get to the “1.9 Template-based automatic particle picking” section.
On submission to queue I get this error:
Traceback (most recent call last):
_ File “cryosparc2_worker/cryosparc2_compute/run.py”, line 49, in cryosparc2_compute.run.main_
_ File “cryosparc2_compute/jobs/runcommon.py”, line 325, in check_default_inputs_
_ assert False, 'Non-optional inputs from the following input groups and their slots are not connected: ’ + missing_inputs + ‘. Please connect all required inputs.’_
AssertionError: Non-optional inputs from the following input groups and their slots are not connected: particles.ctf. Please connect all required inputs.
I also tried running the job directly after setting up the cryosparc environment with:
eval $(cryosparc2_worker/bin/cryosparcw env)
Any idea on how to fix this?