Topaz train should not default to using denoised mics

Particle Picking
1

Hi,

Topaz train defaults to using denoised mics. I think this is mostly undesirable, and should probably not be the default, particularly now that use of Micrograph Denoiser (incompatible with Topaz Train) is fairly widespread.

It is not the default for Topaz extract, but it is the default for Train, at least in 4.6.2.

Cheers
Oli

3 Likes
2

agreed.

if you run Topaz train without denoised, Topaz extract picks that up. Had a few users make overlook the denoise slider a few times with poor results.

3

Hi @olibclarke and @Mark-A-Nakasone,

We have recorded this request. Thanks for your feedback!

Best,
Kye

2 Likes
4

@olibclarke @Mark-A-Nakasone this change (making Topaz Train not use denoised micrographs by default) is included in v4.7.0 (CryoSPARC: Updates). Thank you!

2 Likes
5

Thank you :pray: @kstachowski, @apunjani, and the rest of the CryoSparc Team. This should limit confusion and errors from many users, while advancing the TOPAZ project.

Great to see it in the release notes.

1 Like