The tutorials for Topaz use ‘Topaz Inference’ and that doesn’t exit in Cryosparc v3.1.0. I tried ‘Deep Picker Inference’, but I get this error:
“AssertionError: Input model is not a deep picker model.”
I assume this is for the cryosparc Deep Picker Model and not the Topaz model. Has Topaz Extract replaced Topaz Inference?
I think all versions of CryoSparc I have used from v2 to v3 only have Topaz Extract. Use this. The workflow is: [Topaz Train or Topaz Cross-Validation] >> [Topaz Extract].
Great, thanks. Seems to be working well!
Hi @jaremko, @alexjamesnoble is correct on the workflow.
For clarity, we have updated our guide sections regarding Topaz, to ensure that we use “Topaz Extract” and not “Topaz Inference”. https://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc/deep-picking/deep-picking