Dear CryoSPARC staffs,
When I use Topaz train in CryoSPARC in recent days, many warnings and troubles were shown. Could you please help to solve the problem?
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return self.\_conv_forward(input, self.weight, self.bias)
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File "/home/kemove/miniconda3/envs/topaz/lib/python3.6/site-packages/torch/nn/modules/conv.py", line 443, in \_conv_forward
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self.padding, self.dilation, self.groups)
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RuntimeError: Unable to find a valid cuDNN algorithm to run convolution
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**Traceback (most recent call last): File "cryosparc_master/cryosparc_compute/run.py", line 129, in cryosparc_master.cryosparc_compute.run.main File "/home/kemove/software/cryosparc_worker/cryosparc_compute/jobs/topaz/run_topaz.py", line 384, in run_topaz_wrapper_train utils.run_process(train_command) File "/home/kemove/software/cryosparc_worker/cryosparc_compute/jobs/topaz/topaz_utils.py", line 99, in run_process assert process.returncode == 0, f"Subprocess exited with status {process.returncode} ({str_command})" AssertionError: Subprocess exited with status 1 (/home/kemove/miniconda3/envs/topaz/bin/topaz train --train-images /mnt/ab68010c-5ccf-4cf5-8d83-dcd1d6c18465/liuxb/K160_3_results/CS-k160-3/J69/image_list_train.txt --train-targets /mnt/ab68010c-5ccf-4cf5-8d83-dcd1d6c18465/liuxb/K160_3_results/CS-k160-3/J69…)**
this is the first problem.
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TypeError: concat() takes 1 positional argument but 2 were given
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**Traceback (most recent call last): File "cryosparc_master/cryosparc_compute/run.py", line 129, in cryosparc_master.cryosparc_compute.run.main File "/home/kemove/software/cryosparc_worker/cryosparc_compute/jobs/topaz/run_topaz.py", line 332, in run_topaz_wrapper_train utils.run_process(split_command) File "/home/kemove/software/cryosparc_worker/cryosparc_compute/jobs/topaz/topaz_utils.py", line 99, in run_process assert process.returncode == 0, f"Subprocess exited with status {process.returncode} ({str_command})" AssertionError: Subprocess exited with status 1 (/home/kemove/miniconda3/bin/topaz train_test_split --number 1608 --seed 1679832333 --image-dir /mnt/ab68010c-5ccf-4cf5-8d83-dcd1d6c18465/liuxb/K160_3_results/CS-k160-3/J70/preprocessed /mnt/ab68010c-5ccf-4cf5-8d83-dcd1d6c18465/liuxb/K160_3_results/CS-k160-…)**
this is the second.
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# WARNING: no coordinates are observed with x_coord > 100 or y_coord > 103 . Did you scale the micrographs and particle coordinates correctly?
this is the third.
# WARNING: \~0 particles are out of bounds for image /mnt/ab68010c-5ccf-4cf5-8d83-dcd1d6c18465/liuxb/K160_3_results/CS-k160-3/J72/preprocessed/006742460034114535093_FoilHole_28788073_Data_28782394_28782396_20250829_094330_EER_patch_aligned_doseweighted.mrc. Did you scale the micrographs and particle coordinates correctly?
this is the fourth.
Could you please tell me how to run the Topaz by using Nvidia 5090?