Topaz extract: AssertionError: Subprocess exited with status 1

Hi all,

I keep having error when I tried to run the Topaz extract job. I wonder what I should do to get the job running. Here is the error message.

Traceback (most recent call last):
  File "cryosparc_master/cryosparc_compute/run.py", line 115, in cryosparc_master.cryosparc_compute.run.main
  File "/hpc/group//cryosparc_worker/cryosparc_compute/jobs/topaz/run_topaz.py", line 1182, in run_topaz_wrapper_extract
    utils.run_process(extract_command)
  File "/hpc/group//cryosparc_worker/cryosparc_compute/jobs/topaz/topaz_utils.py", line 99, in run_process
    assert process.returncode == 0, f"Subprocess exited with status {process.returncode} ({str_command})"
AssertionError: Subprocess exited with status 1 (/hpc/group/miniconda3/envs/topaz/bin/topaz extract --radius 14 --threshold -6 --up-scale 16 --assignment-radius -1 --min-radius 5 --max-radius 100 --step-radius 5 --num-workers -1 --device 0 --model /vwork//CS-250602/J331/models/…)

Topaz version: Topaz process using version 0.2.5a
cryosparc version: v4.5.3

Any input would be greatly appreciated!

Welcome to the forum @XiangZhang. Please can you show approx 20 lines that immediately precede the Traceback in the event log.

Thanks, Tempel! I’ll update when that happens.