Topaz: CUDNN error: CUDNN STATUS MAPPING ERROR

Particle Picking
1

Hey All,

Has anyone ran into this error? I am using v4.2 with Topaz 0.2.5-2 that is intalled through SBgrid. I haven’t processed data for several versions of cryosparc, but would use topaz with SBgrid no problem in the past. I’m running 4 3090’s with CUDA 11.6. Any help would be greatly appreciated.

topaz_error
topaz_error1580×624 139 KB

2

Hi J_Fin,

Could you try using Topaz on the same server through the commandline (not through cryosparc) and see if you get the same error?

Thanks,
-Alex

3

HI Alex,

Thanks for the quick response!

I ran the preprocessing fine in commandline, but am unsure where or how to obtain the .csv file? I tried exporting but only see .cs files. I thought I had done this before back in cryosparc v2 but don’t quite remember.

Best
Justin

4

Hi Justin,

Thanks for the info. Did the commandline Topaz run have any errors?

Best,
-Alex

5

HI ALex,

I haven’t ran it because I’m not sure how to generate the csv file for my particles.

Thanks
Justin

6

Hi Justin,

Oh I see. Could you try running topaz denoise from the commandline? You can generate a command here: Topaz GUI

Best,
-Alex

7

Hi ALex,

I received the same error running denoise in commandline (also when running extract in cryrosparc after training a model CPU only). Do you think it maybe an issue with CUDA 11.6? Here is my GPU set up.

GPU
GPU606×618 50.8 KB

8

Hi Justin,

Sorry for the delay. My guess is that it’s an issue with your Topaz installation or environment. I suggest sending the specific commandline commands and errors to your local IT who manages this server for you so they can fix it.

Best,
-Alex