Is it possible for cryosparc to generate thumbnails or raw particle images that make up a particle stack?
Thanks.
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I was going to ask this question today. We get a glimpse of a few during extraction but it would be a nice feature. Related but not ideal, you can “inspect picks” of a 2D selection job and see them in the micrograph.
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This functionality seems to no longer work. I cannot run inspect picks with 2D selections, regardless of the source of exposures.
File “cryosparc_master/cryosparc_compute/run.py”, line 85, in cryosparc_compute.run.main
File “/home_local/hpc/cryosparc2/cryosparc2_master/cryosparc_compute/jobs/manual_picker/run_inspect_simple.py”, line 343, in run_inspect_simple
p = n.polyfit(mic_dfs, mic_med_nccs, 1)
File “<array_function internals>”, line 6, in polyfit
TypeError: expected non-empty vector for x
Thanks for the post! In CryoSPARC v4.1 (released December 12, 2022), we’re excited to announce a new Python library, cryosparc-tools, that allows you perform tasks like this much easier: Getting Started — cryosparc-tools
We have an example of how to generate high-resolution 2D class images. Producing images of particle stacks should be similar.
- Suhail
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