The name of micrographs and particles has an error

[peter.cherepanov]

yes, this is right, it is a new feature.

Converting to star file

Since v3.2.0+210629, particle .mrcs that are imported into cryoSPARC are prepended with the UID of their dataset file in order to keep them unique. I’d be happy to help get the --copy-micrograph-coordinates option working in pyem again.

See full discussion here:

Converting to star file

I am very sorry to bring this up again. Has anything changed to the format of cs files in the last 3-4 weeks? I cannot convert them back to relion anymore. This used to work just fine: csparc2star.py --copy-micrograph-coordinates particles.star cryosparc_P116_J670_001_particles.cs cryosparc_P116_J670_001_particles.star But now it prints out a bunch of errors: /Software/linux/64bit/pyem/pyem-20210614/pyem/pyem/star.py:536: FutureWarning: Columnar iteration over characters will be deprecated i…