Hey cryoSPARC team,
Whenever I try to run a ‘Symmetry search utility’ job, whether it be using rise/twist or pitch/subunits per turn, the job will run through for the most part letting me see the 2D mean squared error surfaces, but then fails at the ‘Compiling job outputs’ stage. The error I get is:
[CPU: 398.8 MB] Traceback (most recent call last): File "cryosparc_worker/cryosparc_compute/run.py", line 90, in cryosparc_compute.run.main File "/usr/local/cryosparc2_worker/cryosparc_compute/jobs/runcommon.py", line 959, in create_summary_from_job summary.update(create_summary_from_dataset(output_group_dataset, result_names_to_types_map)) File "/usr/local/cryosparc2_worker/cryosparc_compute/jobs/runcommon.py", line 942, in create_summary_from_dataset summary_fields = com.summary_result_fields[result_names_to_types_map[prefix]] KeyError: 'symmetry_candidate.sym_params'
I’m not amazingly confident in the 2D heat maps that I can see in these failed jobs, as whenever I run a helix refine using the data suggested by the symmetry search, I end up with a worse resolution than my unbiased helix refine (which is at 8.36A so not the best). Despite my jobs failing, are these symmetry searches complete? Or is there an iterative process to it all which should narrow down the parameters for me (assuming I can get past the error message)?
This is an example of how the 2D heat maps look at the moment