Reference based motion correction error ====== Job process terminated abnormally

[wtempel]

@Dmitry What are the lines at the very end of the job log?
Please can you also check for indicators that the system has run out of memory, like:

@hsnyder

sudo journalctl | grep -i OOM
sudo dmesg | grep -i OOM

OOM refers to “out of memory” - Linux will kill processes that request more memory than is available. If you see OOM log entries from around the time your job failed, you can be pretty sure that’s what happened.

What is the output of the command

cryosparcm icli # enter the CryoSPARC interactive cli
puid, juid = 'P5', 'J64' # substitute actual project and job uids
cli.get_job(puid, juid, 'params_spec', 'heartbeat_at', 'killed_at', 'failed_at')
exit()

[edited to clarify the need for icli]