sorry if this has asked already but could not find it. If you have several datasets in different workspaces, and linked Selected particles from the different workspaces in a new workspace, run a 2D classification including all particles, then select again, and finally want to re-extract using a different box size, how do I do that ? Or in other words, do I need to link also all the CTF-corrected mics ?
Sorry for the delay with this - hopefully you have already figured it out, but you do not actually need to Link jobs within the same project to be able to use the inputs/outputs. Workspaces are just for convenience and organization. You can actually open the job builder for a job, then navigate to a different workspace in the same project, and select an output from there without linking the job.
Thank you, indeed is more of an organizational thing (have a space clean with all “good” output) rather then necessary.